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R. norvegicus Gene: Ercc6 - ENSRNOG00000030017 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000030017
NameErcc6
Descriptionexcision repair cross-complementation group 6 [Source:RGD Symbol;Acc:1311509]
OrganismRattus norvegicus (rat)
Synonym(s)ercc6_predicted, loc306274
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
3.45e3
  • 3.45e3
  • 9.65e3
87.44
  • 87.44
  • 64.84
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
4.74e3
  • 4.74e3
  • 1.15e4
82.74
  • 82.74
  • 57.95
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.44e3
  • 7.44e3
72.89
  • 72.89
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
8.21e3
  • 8.21e3
  • 8.78e3
  • 9.08e3
70.08
  • 70.08
  • 68.01
  • 66.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.55e3
  • 8.55e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.69e3
  • 8.69e3
  • 9.40e3
68.36
  • 68.36
  • 65.76
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
9.08e3
  • 9.08e3
66.91
  • 66.91
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.15e3
  • 9.15e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
9.17e3
  • 9.17e3
66.59
  • 66.59
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
9.55e3
  • 9.55e3
65.21
  • 65.21
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
9.90e3
  • 9.90e3
63.95
  • 63.95
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.95e3
  • 9.95e3
63.77
  • 63.77
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.71
  • 62.71
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
62.31
  • 62.31
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
62.20
  • 62.20
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.04e4
  • 1.04e4
62.00
  • 62.00
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
61.67
  • 61.67
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.80
  • 60.80
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.50
  • 60.50
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
59.88
  • 59.88
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.14e4
  • 1.14e4
58.45
  • 58.45
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.40e4
  • 1.40e4
  • 1.41e4
48.96
  • 48.96
  • 48.65
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000030017.

Cross-references

EnsemblENSRNOG00000030017 (Ercc6)
RGD1311509 (Ercc6)
EMBLAC141211, CH474046
Uniprot/SPTREMBLA0A0G2JTU1, A0A0G2JTU1_RAT, D3ZS47, D3ZS47_RAT

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