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R. norvegicus Gene: Trim71 - ENSRNOG00000030098 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000030098
NameTrim71
Descriptiontripartite motif containing 71, E3 ubiquitin protein ligase [Source:RGD Symbol;Acc:1566388]
OrganismRattus norvegicus (rat)
Synonym(s)lin41, loc301042, rgd1566388
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034920infant stage
1.43e4
  • 1.43e4
48.07
  • 48.07
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.69e4
  • 1.69e4
38.34
  • 38.34
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.75e4
  • 1.75e4
36.24
  • 36.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.81e4
  • 1.81e4
  • 2.26e4
33.92
  • 33.92
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.04e4
  • 2.04e4
25.74
  • 25.74
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000030098.

Cross-references

EnsemblENSRNOG00000030098 (Trim71)
RGD1566388 (Trim71)
Uniprot/SWISSPROTD3ZVM4, LIN41_RAT

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