R. norvegicus Gene: Fndc5 - ENSRNOG00000030238 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000030238
NameFndc5
Descriptionfibronectin type III domain containing 5 [Source:RGD Symbol;Acc:708525]
OrganismRattus norvegicus (rat)
Synonym(s)loc260327
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
900
  • 900
96.72
  • 96.72
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.40e3
  • 1.40e3
94.90
  • 94.90
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.44e3
  • 1.44e3
94.76
  • 94.76
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
2.04e3
  • 2.04e3
  • 2.96e3
92.58
  • 92.58
  • 89.20
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
2.26e3
  • 2.26e3
91.78
  • 91.78
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
2.57e3
  • 2.57e3
90.66
  • 90.66
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.95e3
  • 4.95e3
  • 5.36e3
81.96
  • 81.96
  • 80.47
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.80e3
  • 6.80e3
  • 1.19e4
75.22
  • 75.22
  • 56.66
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.11e4
  • 1.11e4
59.74
  • 59.74
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
  • 1.28e4
  • 1.36e4
57.90
  • 57.90
  • 53.52
  • 50.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.29
  • 55.29
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.41
  • 54.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.30e4
  • 1.30e4
52.71
  • 52.71
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
51.94
  • 51.94
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
51.77
  • 51.77
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.27
  • 50.27
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.84
  • 49.84
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.37
  • 49.37
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
47.90
  • 47.90
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.70
  • 47.70
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.59e4
  • 1.59e4
42.19
  • 42.19
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000030238.

Cross-references

EnsemblENSRNOG00000030238 (Fndc5)
RGD708525 (Fndc5)
EMBLAABR03042295, AABR03047757, AC141171, AF529211
Uniprot/SPTREMBLA0A096MIU1, A0A096MIU1_RAT
Uniprot/SWISSPROTFNDC5_RAT, Q8K3V5

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