We are happy to announce that we have released the new Bgee 15 version as a beta test. Please check it out at https://bgee.org/bgee15_0.

R. norvegicus Gene: Samsn1 - ENSRNOG00000030930 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000030930
NameSamsn1
DescriptionSAM domain, SH3 domain and nuclear localization signals, 1 [Source:RGD Symbol;Acc:620926]
OrganismRattus norvegicus (rat)
Synonym(s)nash
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
4.66e3
  • 4.66e3
83.04
  • 83.04
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
6.64e3
  • 6.64e3
75.81
  • 75.81
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
7.27e3
  • 7.27e3
73.52
  • 73.52
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.73e3
  • 8.73e3
68.19
  • 68.19
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.22
  • 61.22
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.09e4
  • 1.09e4
  • 1.16e4
  • 1.31e4
60.29
  • 60.29
  • 57.66
  • 52.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.20
  • 59.20
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
55.52
  • 55.52
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.23e4
  • 1.23e4
55.14
  • 55.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.25e4
  • 1.25e4
54.46
  • 54.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.28e4
  • 1.28e4
53.24
  • 53.24
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.36e4
  • 1.36e4
50.41
  • 50.41
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
49.29
  • 49.29
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.41e4
  • 1.41e4
48.79
  • 48.79
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.44e4
  • 1.44e4
47.72
  • 47.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.48e4
  • 1.48e4
  • 1.71e4
46.20
  • 46.20
  • 37.64
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.26
  • 45.26
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.63e4
  • 1.63e4
40.67
  • 40.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
  • 2.26e4
28.71
  • 28.71
  • 17.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000030930.

Cross-references

EnsemblENSRNOG00000030930 (Samsn1)
RGD620926 (Samsn1)
EMBLAABR07072214, CH473989
Uniprot/SPTREMBLA0A0G2K960, A0A0G2K960_RAT, G3V993, G3V993_RAT

Do not show this banner again