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R. norvegicus Gene: RGD1563812 - ENSRNOG00000031864 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000031864
NameRGD1563812
Descriptionsimilar to basic transcription factor 3 [Source:RGD Symbol;Acc:1563812]
OrganismRattus norvegicus (rat)
Synonym(s)loc498293
Orthologs(s)27 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
293
  • 293
98.94
  • 98.94
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
394
  • 394
98.57
  • 98.57
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
447
  • 447
98.38
  • 98.38
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
496
  • 496
98.20
  • 98.20
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
522
  • 522
98.10
  • 98.10
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
526
  • 526
98.09
  • 98.09
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
540
  • 540
98.03
  • 98.03
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
548
  • 548
98.01
  • 98.01
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
561
  • 561
97.96
  • 97.96
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
579
  • 579
97.90
  • 97.90
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
752
  • 752
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
818
  • 818
  • 1.75e3
97.02
  • 97.02
  • 93.61
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
991
  • 991
  • 1.15e3
  • 1.97e3
96.39
  • 96.39
  • 95.82
  • 92.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.02e3
  • 1.02e3
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.14e3
  • 1.14e3
95.84
  • 95.84
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.32e3
  • 1.32e3
  • 3.38e3
95.20
  • 95.20
  • 87.68
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.46e3
  • 1.46e3
94.68
  • 94.68
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.71e3
  • 1.71e3
93.77
  • 93.77
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.87e3
  • 1.87e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.87e3
  • 1.87e3
93.20
  • 93.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia1 species1 geneCompare expression
Glires2 species2 genesCompare expression
Euarchontoglires6 species8 genesCompare expression
Boreoeutheria11 species13 genesCompare expression
Theria12 species14 genesCompare expression
Mammalia13 species15 genesCompare expression
Amniota15 species18 genesCompare expression
Tetrapoda16 species19 genesCompare expression
Euteleostomi17 species20 genesCompare expression
Bilateria24 species27 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000031864.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria5 genesCompare expression
Opisthokonta6 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000031864.

Cross-references

EnsemblENSRNOG00000031864 (RGD1563812)
RGD1563812 (RGD1563812)
EMBLAABR07021871, CH473985
Uniprot/SPTREMBLM0R5M7, M0R5M7_RAT

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