R. norvegicus Gene: Mlc1 - ENSRNOG00000032871 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000032871
NameMlc1
Descriptionmegalencephalic leukoencephalopathy with subcortical cysts 1 [Source:RGD Symbol;Acc:1308552]
OrganismRattus norvegicus (rat)
Synonym(s)loc315215, mlc1_predicted
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
834
  • 834
  • 3.11e3
96.97
  • 96.97
  • 88.68
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
875
  • 875
  • 1.16e3
96.81
  • 96.81
  • 95.77
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.45e3
  • 1.45e3
94.71
  • 94.71
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.69e3
  • 1.69e3
  • 2.97e3
  • 5.22e3
93.84
  • 93.84
  • 89.17
  • 80.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
2.84e3
  • 2.84e3
  • 3.38e3
89.66
  • 89.66
  • 87.70
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.09e4
  • 1.09e4
60.22
  • 60.22
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.37e4
  • 1.37e4
50.07
  • 50.07
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.38e4
  • 1.38e4
  • 1.46e4
49.57
  • 49.57
  • 46.93
AEIR
  • AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.71
  • 38.71
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.76e4
  • 1.76e4
36.00
  • 36.00
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.99e4
  • 1.99e4
27.57
  • 27.57
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
2.00e4
  • 2.00e4
27.04
  • 27.04
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.38e4
  • 2.38e4
13.38
  • 13.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000032871.

Cross-references

EnsemblENSRNOG00000032871 (Mlc1)
RGD1308552 (Mlc1)
EMBLAABR07058660, CH474027
Uniprot/SPTREMBLD4ABB2, D4ABB2_RAT

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