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R. norvegicus Gene: Lyc2 - ENSRNOG00000034139 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000034139
NameLyc2
Descriptionlysozyme C type 2 [Source:RGD Symbol;Acc:1593616]
OrganismRattus norvegicus (rat)
Synonym(s)d4a2i8, loc688047, lyz2, mgc188464
Orthologs(s)61 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
1.18e3
  • 1.18e3
  • 1.74e3
  • 2.17e3
95.70
  • 95.70
  • 93.67
  • 92.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.90e3
  • 4.90e3
82.14
  • 82.14
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.68e3
  • 9.68e3
64.75
  • 64.75
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
9.77e3
  • 9.77e3
  • 1.63e4
64.41
  • 64.41
  • 40.59
AEIR
  • AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.05e4
  • 1.05e4
61.60
  • 61.60
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.29
  • 59.29
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
  • 1.77e4
59.03
  • 59.03
  • 35.58
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.89
  • 57.89
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.15
  • 56.15
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
54.02
  • 54.02
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.42e4
  • 1.42e4
  • 1.63e4
48.19
  • 48.19
  • 40.53
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
47.87
  • 47.87
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.43e4
  • 1.43e4
47.77
  • 47.77
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.45e4
  • 1.45e4
47.04
  • 47.04
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
45.05
  • 45.05
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
44.91
  • 44.91
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.55e4
  • 1.55e4
43.70
  • 43.70
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.64e4
  • 1.64e4
40.20
  • 40.20
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.68e4
  • 1.68e4
38.89
  • 38.89
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.04e4
  • 2.04e4
25.52
  • 25.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Rodentia1 species2 genesCompare expression
Glires2 species4 genesCompare expression
Euarchontoglires6 species8 genesCompare expression
Boreoeutheria10 species12 genesCompare expression
Theria11 species16 genesCompare expression
Mammalia12 species17 genesCompare expression
Tetrapoda13 species18 genesCompare expression
Bilateria19 species61 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000034139.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Muroidea2 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000034139.

Cross-references

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