R. norvegicus Gene: Vsx1 - ENSRNOG00000042220 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000042220
NameVsx1
Descriptionvisual system homeobox 1 [Source:RGD Symbol;Acc:1305667]
OrganismRattus norvegicus (rat)
Synonym(s)loc366228, loc689704
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.94e3
  • 9.94e3
63.80
  • 63.80
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.10
  • 63.10
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.29e4
  • 1.29e4
  • 2.08e4
52.86
  • 52.86
  • 24.06
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000104life cycle
1.31e4
  • 1.31e4
52.18
  • 52.18
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.31e4
  • 1.31e4
  • 1.94e4
52.14
  • 52.14
  • 29.23
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.33e4
  • 1.33e4
51.65
  • 51.65
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.51e4
  • 1.51e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.71
  • 42.71
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.57e4
  • 1.57e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.90e4
  • 1.90e4
30.79
  • 30.79
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
2.06e4
  • 2.06e4
25.02
  • 25.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000042220.

Cross-references

EnsemblENSRNOG00000042220 (Vsx1)
RGD1305667 (Vsx1)
EMBLAABR07054290, CH474050
Uniprot/SPTREMBLD3ZQZ0, D3ZQZ0_RAT

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