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R. norvegicus Gene: Cbx4 - ENSRNOG00000046207 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000046207
NameCbx4
Descriptionchromobox homolog 4 [Source:RGD Symbol;Acc:1587243]
OrganismRattus norvegicus (rat)
Synonym(s)loc501403
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
3.50e3
  • 3.50e3
87.27
  • 87.27
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
4.56e3
  • 4.56e3
83.41
  • 83.41
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.76e3
  • 5.76e3
79.03
  • 79.03
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
5.83e3
  • 5.83e3
78.75
  • 78.75
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.23e3
  • 6.23e3
  • 1.26e4
77.29
  • 77.29
  • 54.10
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
6.34e3
  • 6.34e3
  • 6.43e3
  • 6.97e3
76.92
  • 76.92
  • 76.56
  • 74.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.98e3
  • 6.98e3
74.56
  • 74.56
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
7.06e3
  • 7.06e3
  • 7.28e3
74.28
  • 74.28
  • 73.50
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
7.22e3
  • 7.22e3
73.72
  • 73.72
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
7.53e3
  • 7.53e3
72.57
  • 72.57
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
7.56e3
  • 7.56e3
72.48
  • 72.48
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
7.72e3
  • 7.72e3
71.88
  • 71.88
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.13e3
  • 8.13e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.92e3
  • 8.92e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
9.35e3
  • 9.35e3
65.95
  • 65.95
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
9.55e3
  • 9.55e3
65.20
  • 65.20
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.75e3
  • 9.75e3
64.49
  • 64.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
  • 2.26e4
61.40
  • 61.40
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
58.13
  • 58.13
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.45
  • 56.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000046207.

Cross-references

EnsemblENSRNOG00000046207 (Cbx4)
RGD1587243 (Cbx4)
EMBLAABR07030897
Uniprot/SPTREMBLM0RAR7, M0RAR7_RAT

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