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R. norvegicus Gene: Tceal5 - ENSRNOG00000046280 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000046280
NameTceal5
Descriptiontranscription elongation factor A (SII)-like 5 [Source:RGD Symbol;Acc:1594149]
OrganismRattus norvegicus (rat)
Synonym(s)loc680282, newgene_1594149
Orthologs(s)28 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.67e3
  • 1.67e3
93.90
  • 93.90
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.79e3
  • 1.79e3
  • 2.04e3
93.50
  • 93.50
  • 92.56
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.90e3
  • 1.90e3
  • 2.21e4
93.08
  • 93.08
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
2.18e3
  • 2.18e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.32e3
  • 4.32e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
9.76e3
  • 9.76e3
64.44
  • 64.44
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.15e4
  • 1.15e4
57.98
  • 57.98
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
1.22e4
  • 1.22e4
55.56
  • 55.56
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
49.89
  • 49.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.47e4
  • 1.47e4
46.34
  • 46.34
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.50e4
  • 1.50e4
45.21
  • 45.21
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.53e4
  • 1.53e4
44.42
  • 44.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.64e4
  • 1.64e4
40.34
  • 40.34
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.74e4
  • 1.74e4
36.66
  • 36.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
35.60
  • 35.60
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.82e4
  • 1.82e4
33.59
  • 33.59
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
  • 2.26e4
28.72
  • 28.72
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
2.00e4
  • 2.00e4
27.06
  • 27.06
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
2.10e4
  • 2.10e4
23.41
  • 23.41
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
2.28e4
  • 2.28e4
17.08
  • 17.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species4 genesCompare expression
Glires3 species6 genesCompare expression
Euarchontoglires6 species14 genesCompare expression
Boreoeutheria11 species28 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000046280.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Rodentia1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000046280.

Cross-references

EnsemblENSRNOG00000046280 (Tceal5)
RGD1594149 (Tceal5), 9470583 (NEWGENE_1594149)
EMBLAABR07040629, CH474117
Uniprot/SPTREMBLM0RDJ7, M0RDJ7_RAT

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