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R. norvegicus Gene: Sec22c - ENSRNOG00000047873 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000047873
NameSec22c
DescriptionSEC22 homolog C, vesicle trafficking protein [Source:RGD Symbol;Acc:1590146]
OrganismRattus norvegicus (rat)
Synonym(s)loc687022
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
5.52e3
  • 5.52e3
79.88
  • 79.88
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
6.14e3
  • 6.14e3
  • 8.73e3
77.65
  • 77.65
  • 68.19
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
7.09e3
  • 7.09e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
7.46e3
  • 7.46e3
  • 2.21e4
72.81
  • 72.81
  • 19.54
AEIR
  • AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
7.67e3
  • 7.67e3
72.07
  • 72.07
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.33e3
  • 8.33e3
69.68
  • 69.68
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
8.39e3
  • 8.39e3
  • 2.26e4
69.44
  • 69.44
  • 17.63
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
9.35e3
  • 9.35e3
65.94
  • 65.94
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
9.93e3
  • 9.93e3
63.81
  • 63.81
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
9.96e3
  • 9.96e3
63.71
  • 63.71
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.01e4
  • 1.01e4
63.17
  • 63.17
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.02e4
  • 1.02e4
62.71
  • 62.71
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.27
  • 61.27
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.53
  • 60.53
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.12e4
  • 1.12e4
59.05
  • 59.05
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.74
  • 57.74
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
57.01
  • 57.01
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
1.18e4
  • 1.18e4
57.00
  • 57.00
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
  • 1.27e4
  • 1.30e4
56.72
  • 56.72
  • 53.62
  • 52.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.41
  • 56.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000047873.

Cross-references

EnsemblENSRNOG00000047873 (Sec22c)
RGD1590146 (Sec22c)
EMBLAABR07071766, AABR07071767
Uniprot/SPTREMBLM0R3S2, M0R3S2_RAT

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