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R. norvegicus Gene: Atg4a - ENSRNOG00000050960 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000050960
NameAtg4a
Descriptionautophagy related 4A, cysteine peptidase [Source:RGD Symbol;Acc:1596915]
OrganismRattus norvegicus (rat)
Synonym(s)agt4a, atg4al1, loc100910507, loc678769, rgd1588268
Orthologs(s)26 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
3.42e3
  • 3.42e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
4.48e3
  • 4.48e3
83.67
  • 83.67
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
5.23e3
  • 5.23e3
80.96
  • 80.96
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
5.89e3
  • 5.89e3
78.53
  • 78.53
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0034920infant stage
6.23e3
  • 6.23e3
  • 7.02e3
  • 1.04e4
77.32
  • 77.32
  • 74.44
  • 62.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
6.54e3
  • 6.54e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
6.80e3
  • 6.80e3
75.23
  • 75.23
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
7.05e3
  • 7.05e3
74.31
  • 74.31
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
7.19e3
  • 7.19e3
73.79
  • 73.79
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
8.14e3
  • 8.14e3
70.36
  • 70.36
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.28e3
  • 8.28e3
69.84
  • 69.84
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.34e3
  • 8.34e3
69.64
  • 69.64
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.35e3
  • 8.35e3
69.57
  • 69.57
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
8.44e3
  • 8.44e3
69.26
  • 69.26
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
8.51e3
  • 8.51e3
69.01
  • 69.01
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
8.58e3
  • 8.58e3
68.74
  • 68.74
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
8.78e3
  • 8.78e3
68.03
  • 68.03
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
8.78e3
  • 8.78e3
68.02
  • 68.02
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.12e3
  • 9.12e3
  • 9.81e3
66.77
  • 66.77
  • 64.26
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
1.34e4
  • 1.34e4
  • 1.34e4
51.25
  • 51.25
  • 51.13
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.65e4
  • 1.65e4
  • 2.26e4
40.05
  • 40.05
  • 17.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:
  • Affymetrix data: GEO
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species2 genesCompare expression
Glires2 species3 genesCompare expression
Euarchontoglires6 species7 genesCompare expression
Boreoeutheria12 species13 genesCompare expression
Theria13 species14 genesCompare expression
Mammalia14 species15 genesCompare expression
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000050960.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSRNOG00000050960.

Cross-references

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