R. norvegicus Gene: Trnau1ap - ENSRNOG00000055344 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000055344
NameTrnau1ap
DescriptiontRNA selenocysteine 1 associated protein 1 [Source:MGI Symbol;Acc:MGI:1919037]
OrganismRattus norvegicus (rat)
Synonym(s)1110007f05rik, secp43, trspap1
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
3.53e3
  • 3.53e3
87.16
  • 87.16
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
3.68e3
  • 3.68e3
86.58
  • 86.58
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
4.33e3
  • 4.33e3
84.24
  • 84.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
4.93e3
  • 4.93e3
  • 6.54e3
  • 6.57e3
82.03
  • 82.03
  • 76.16
  • 76.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
5.12e3
  • 5.12e3
81.34
  • 81.34
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
5.20e3
  • 5.20e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000113post-juvenile adult stage
5.44e3
  • 5.44e3
80.18
  • 80.18
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
5.51e3
  • 5.51e3
79.93
  • 79.93
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
5.85e3
  • 5.85e3
  • 6.07e3
78.69
  • 78.69
  • 77.91
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.96e3
  • 5.96e3
78.29
  • 78.29
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
5.98e3
  • 5.98e3
78.22
  • 78.22
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
6.25e3
  • 6.25e3
77.24
  • 77.24
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
6.54e3
  • 6.54e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
6.63e3
  • 6.63e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
6.71e3
  • 6.71e3
75.55
  • 75.55
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
6.95e3
  • 6.95e3
74.68
  • 74.68
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
6.96e3
  • 6.96e3
74.65
  • 74.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
7.24e3
  • 7.24e3
73.65
  • 73.65
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
7.79e3
  • 7.79e3
71.62
  • 71.62
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
9.95e3
  • 9.95e3
  • 2.26e4
63.75
  • 63.75
  • 17.63
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species4 genesCompare expression
Euarchontoglires7 species8 genesCompare expression
Boreoeutheria13 species14 genesCompare expression
Theria14 species15 genesCompare expression
Mammalia15 species16 genesCompare expression
Amniota17 species18 genesCompare expression
Tetrapoda18 species19 genesCompare expression
Euteleostomi19 species20 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000055344.

Cross-references

EnsemblENSRNOG00000055344 (Trnau1ap)
MGIMGI:1919037 (Trnau1ap)
EMBLAABR07050085
Uniprot/SPTREMBLA0A0G2JZ46, A0A0G2JZ46_RAT

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