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R. norvegicus Gene: Clec16a - ENSRNOG00000057378 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000057378
NameClec16a
DescriptionC-type lectin domain family 16, member A [Source:RGD Symbol;Acc:1305773]
OrganismRattus norvegicus (rat)
Synonym(s)loc287044, rgd1305773
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
4.03e3
  • 4.03e3
85.33
  • 85.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
4.92e3
  • 4.92e3
  • 1.46e4
82.07
  • 82.07
  • 46.95
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
5.76e3
  • 5.76e3
  • 7.63e3
79.02
  • 79.02
  • 72.22
AEIR
  • AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
5.85e3
  • 5.85e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
5.91e3
  • 5.91e3
78.48
  • 78.48
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
6.34e3
  • 6.34e3
  • 1.20e4
76.91
  • 76.91
  • 56.19
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.06e3
  • 7.06e3
74.28
  • 74.28
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
7.30e3
  • 7.30e3
73.40
  • 73.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
7.37e3
  • 7.37e3
73.15
  • 73.15
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
8.08e3
  • 8.08e3
70.57
  • 70.57
AEIR
  • AEIR
UBERON:0002107liver
  • RnorDv:00000194-6-month-old stage (rat)
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034920infant stage
8.08e3
  • 8.08e3
  • 9.05e3
  • 1.17e4
70.55
  • 70.55
  • 67.05
  • 57.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
8.15e3
  • 8.15e3
70.31
  • 70.31
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
8.43e3
  • 8.43e3
69.28
  • 69.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
8.85e3
  • 8.85e3
67.76
  • 67.76
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
9.00e3
  • 9.00e3
67.21
  • 67.21
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
9.10e3
  • 9.10e3
66.85
  • 66.85
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.50e3
  • 9.50e3
65.38
  • 65.38
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
63.58
  • 63.58
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.03e4
  • 1.03e4
62.65
  • 62.65
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
1.20e4
  • 1.20e4
56.12
  • 56.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000057378.

Cross-references

EnsemblENSRNOG00000057378 (Clec16a)
RGD1305773 (Clec16a)
EMBLAABR07029067, AABR07072071, AC103514
Uniprot/SPTREMBLA0A0G2KA14, A0A0G2KA14_RAT

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