R. norvegicus Gene: Sdc1 - ENSRNOG00000059947 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000059947
NameSdc1
Descriptionsyndecan 1 [Source:RGD Symbol;Acc:3648]
OrganismRattus norvegicus (rat)
Synonym(s)hspg, synd1, syndeca, syndecan

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
689
  • 689
97.49050
  • 97.49050
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
978
  • 978
96.43626
  • 96.43626
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
1.14e3
  • 1.14e3
95.84119
  • 95.84119
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
1.22e3
  • 1.22e3
95.54605
  • 95.54605
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034920infant stage
  • UBERON:0000113post-juvenile adult stage
1.26e3
  • 1.26e3
  • 1.88e3
95.42065
  • 95.42065
  • 93.16023
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.56e3
  • 1.56e3
94.29916
  • 94.29916
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.85e3
  • 1.85e3
93.25630
  • 93.25630
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
2.16e3
  • 2.16e3
92.12496
  • 92.12496
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
3.75e3
  • 3.75e3
86.31028
  • 86.31028
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
3.98e3
  • 3.98e3
85.48517
  • 85.48517
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
6.16e3
  • 6.16e3
77.51793
  • 77.51793
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
9.28e3
  • 9.28e3
66.14520
  • 66.14520
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
9.31e3
  • 9.31e3
66.04771
  • 66.04771
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
9.39e3
  • 9.39e3
65.75938
  • 65.75938
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.00e4
  • 1.00e4
63.52322
  • 63.52322
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
1.06e4
  • 1.06e4
61.30437
  • 61.30437
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.19e4
  • 1.19e4
56.53033
  • 56.53033
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000113post-juvenile adult stage
1.38e4
  • 1.38e4
  • 1.58e4
49.54955
  • 49.54955
  • 42.27454
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.75e4
44.10209
  • 44.10209
  • 36.26250
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Cross-references

EMBLBC061834, M81785, S61865, X60651
EnsemblENSRNOG00000059947 (Sdc1)
RGD3648 (Sdc1)
Uniprot/SWISSPROTP26260, SDC1_RAT

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