R. norvegicus Gene: Psca - ENSRNOG00000061376 - Rattus norvegicus (rat)

General information

Ensembl IDENSRNOG00000061376
NamePsca
Descriptionprostate stem cell antigen [Source:RGD Symbol;Acc:1594221]
OrganismRattus norvegicus (rat)
Synonym(s)loc680210
Orthologs(s)12 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000945stomach
  • UBERON:0000113post-juvenile adult stage
12.0
  • 12.0
99.96
  • 99.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.55e3
  • 1.55e3
  • 9.60e3
94.37
  • 94.37
  • 65.02
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0000113post-juvenile adult stage
7.48e3
  • 7.48e3
72.75
  • 72.75
AEIR
  • AEIR
UBERON:0001264pancreas
  • UBERON:0000113post-juvenile adult stage
8.93e3
  • 8.93e3
67.48
  • 67.48
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0000113post-juvenile adult stage
9.63e3
  • 9.63e3
64.92
  • 64.92
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000113post-juvenile adult stage
9.81e3
  • 9.81e3
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0002370thymus
  • UBERON:0000113post-juvenile adult stage
1.08e4
  • 1.08e4
60.53
  • 60.53
AEIR
  • AEIR
UBERON:0001043esophagus
  • UBERON:0000113post-juvenile adult stage
1.10e4
  • 1.10e4
60.11
  • 60.11
AEIR
  • AEIR
UBERON:0001377quadriceps femoris
  • UBERON:0000113post-juvenile adult stage
1.16e4
  • 1.16e4
57.62
  • 57.62
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000113post-juvenile adult stage
  • RnorDv:00000194-6-month-old stage (rat)
1.27e4
  • 1.27e4
  • 1.44e4
53.87
  • 53.87
  • 47.36
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0000113post-juvenile adult stage
1.32e4
  • 1.32e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0002115jejunum
  • UBERON:0000113post-juvenile adult stage
1.48e4
  • 1.48e4
45.91
  • 45.91
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000113post-juvenile adult stage
1.54e4
  • 1.54e4
43.76
  • 43.76
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0000113post-juvenile adult stage
1.60e4
  • 1.60e4
41.55
  • 41.55
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
40.85
  • 40.85
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 1.76e4
40.30
  • 40.30
  • 36.00
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000113post-juvenile adult stage
1.85e4
  • 1.85e4
32.71
  • 32.71
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0000113post-juvenile adult stage
1.90e4
  • 1.90e4
30.74
  • 30.74
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0000113post-juvenile adult stage
2.00e4
  • 2.00e4
27.31
  • 27.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Murinae1 species1 geneCompare expression
Rodentia2 species2 genesCompare expression
Glires3 species3 genesCompare expression
Euarchontoglires7 species7 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Amniota11 species11 genesCompare expression
Tetrapoda12 species12 genesCompare expression

Orthology information comes from OMA : ENSRNOG00000061376.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda1 geneCompare expression

Paralogy information comes from OMA : ENSRNOG00000061376.

Cross-references

EnsemblENSRNOG00000061376 (Psca)
RGD1594221 (Psca)
EMBLAABR07058427
Uniprot/SPTREMBLD4A6I7, D4A6I7_RAT

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