S. scrofa Gene: - ENSSSCG00000000010 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000000010
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
222
  • 222
  • 471
  • 2.82e3
99.06
  • 99.06
  • 98.01
  • 88.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
440
  • 440
98.14
  • 98.14
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
539
  • 539
97.72
  • 97.72
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
600
  • 600
  • 903
  • 1.78e3
97.46
  • 97.46
  • 96.18
  • 92.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
610
  • 610
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
678
  • 678
  • 1.33e3
97.13
  • 97.13
  • 94.39
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
841
  • 841
  • 1.34e3
  • 1.76e3
96.44
  • 96.44
  • 94.32
  • 92.56
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.08e3
  • 1.08e3
  • 2.12e3
  • 1.24e4
95.43
  • 95.43
  • 91.02
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.13e3
  • 1.13e3
95.23
  • 95.23
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.59e3
  • 1.59e3
  • 1.60e3
93.28
  • 93.28
  • 93.21
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.61e3
  • 1.61e3
  • 4.89e3
  • 4.98e3
  • 5.19e3
  • 6.93e3
93.19
  • 93.19
  • 79.28
  • 78.91
  • 78.01
  • 70.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.67e3
  • 1.67e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.13e3
  • 2.13e3
90.97
  • 90.97
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
2.21e3
  • 2.21e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.23e3
  • 2.23e3
  • 2.84e3
  • 3.12e3
90.57
  • 90.57
  • 87.97
  • 86.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.43e3
  • 2.43e3
  • 2.61e3
89.70
  • 89.70
  • 88.94
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
2.62e3
  • 2.62e3
88.89
  • 88.89
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
3.23e3
  • 3.23e3
86.33
  • 86.33
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
3.50e3
  • 3.50e3
85.16
  • 85.16
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
3.75e3
  • 3.75e3
84.13
  • 84.13
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
4.57e3
  • 4.57e3
80.65
  • 80.65
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
4.57e3
  • 4.57e3
80.64
  • 80.64
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.66e3
  • 4.66e3
80.25
  • 80.25
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.22e3
  • 5.22e3
77.86
  • 77.86
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
5.50e3
  • 5.50e3
76.71
  • 76.71
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
5.50e3
  • 5.50e3
76.69
  • 76.69
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.70e3
  • 5.70e3
75.84
  • 75.84
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
6.07e3
  • 6.07e3
74.29
  • 74.29
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.86e3
  • 6.86e3
70.90
  • 70.90
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
7.28e3
  • 7.28e3
69.14
  • 69.14
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.29e3
  • 7.29e3
  • 7.37e3
  • 7.53e3
  • 1.03e4
69.11
  • 69.11
  • 68.78
  • 68.10
  • 56.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
7.47e3
  • 7.47e3
68.36
  • 68.36
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.48e3
  • 7.48e3
68.31
  • 68.31
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
7.48e3
  • 7.48e3
68.30
  • 68.30
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.02e3
  • 8.02e3
  • 1.40e4
66.00
  • 66.00
  • 40.85
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
63.05
  • 63.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
  • 1.33e4
55.53
  • 55.53
  • 43.52
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
  • 1.23e4
54.46
  • 54.46
  • 48.00
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.69
  • 52.69
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.12e4
  • 1.12e4
52.47
  • 52.47
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.23e4
  • 1.23e4
47.91
  • 47.91
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.71
  • 46.71
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.18
  • 43.18
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.15
  • 40.15
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.46
  • 38.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000000010.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000000010.

Cross-references

EnsemblENSSSCG00000000010
EMBLCU633534
Uniprot/SPTREMBLF1SM61, F1SM61_PIG

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