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S. scrofa Gene: - ENSSSCG00000000079 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000000079
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.92e3
  • 1.92e3
  • 1.14e4
91.85
  • 91.85
  • 51.75
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
5.95e3
  • 5.95e3
74.78
  • 74.78
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.15e3
  • 6.15e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.65e3
  • 6.65e3
71.82
  • 71.82
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.23e3
  • 8.23e3
65.10
  • 65.10
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
9.17e3
  • 9.17e3
61.13
  • 61.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
  • 1.49e4
  • 2.06e4
51.08
  • 51.08
  • 36.92
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.60e4
47.51
  • 47.51
  • 32.23
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.26e4
  • 1.26e4
  • 1.33e4
46.38
  • 46.38
  • 43.65
AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.25
  • 45.25
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.53
  • 44.53
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.62
  • 43.62
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.25
  • 41.25
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.48e4
  • 1.48e4
37.33
  • 37.33
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.49e4
  • 1.49e4
36.67
  • 36.67
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.56
  • 35.56
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.18
  • 34.18
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 2.07e4
30.28
  • 30.28
  • 12.09
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.66e4
  • 1.66e4
29.70
  • 29.70
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
  • 1.97e4
29.16
  • 29.16
  • 16.35
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.79e4
  • 1.79e4
  • 1.93e4
24.31
  • 24.31
  • 18.05
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.15
  • 23.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.82e4
  • 1.82e4
  • 1.90e4
  • 2.16e4
22.88
  • 22.88
  • 19.27
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.85e4
  • 1.85e4
  • 2.04e4
21.39
  • 21.39
  • 13.68
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.92e4
  • 1.92e4
18.46
  • 18.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000000079.

Cross-references

EnsemblENSSSCG00000000079
EMBLCU463166
Uniprot/SPTREMBLF1SRA2, F1SRA2_PIG

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