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S. scrofa Gene: - ENSSSCG00000000297 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000000297
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
907
  • 907
96.16
  • 96.16
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.70e3
  • 2.70e3
  • 6.94e3
88.55
  • 88.55
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
2.85e3
  • 2.85e3
  • 3.45e3
  • 3.68e3
  • 4.74e3
87.92
  • 87.92
  • 85.40
  • 84.40
  • 79.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.50e3
  • 3.50e3
85.17
  • 85.17
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
3.96e3
  • 3.96e3
83.22
  • 83.22
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.97e3
  • 3.97e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.23e3
  • 4.23e3
82.07
  • 82.07
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
4.73e3
  • 4.73e3
79.95
  • 79.95
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.83e3
  • 5.83e3
75.31
  • 75.31
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
7.11e3
  • 7.11e3
69.88
  • 69.88
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
8.05e3
  • 8.05e3
  • 1.30e4
65.90
  • 65.90
  • 44.84
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.07e3
  • 8.07e3
65.78
  • 65.78
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.47e3
  • 8.47e3
  • 1.24e4
64.10
  • 64.10
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.59e3
  • 8.59e3
  • 9.15e3
  • 9.97e3
63.61
  • 63.61
  • 61.23
  • 57.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
8.96e3
  • 8.96e3
  • 9.31e3
62.04
  • 62.04
  • 60.53
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.97e3
  • 8.97e3
61.97
  • 61.97
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.22e3
  • 9.22e3
60.94
  • 60.94
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.85e3
  • 9.85e3
  • 1.37e4
58.27
  • 58.27
  • 42.10
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.93
  • 55.93
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
  • 1.45e4
55.52
  • 55.52
  • 38.69
AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.80
  • 50.80
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.12
  • 50.12
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.21e4
  • 1.21e4
48.68
  • 48.68
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.17
  • 47.17
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.25e4
  • 1.25e4
  • 1.30e4
  • 1.49e4
46.93
  • 46.93
  • 44.85
  • 36.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
  • 1.44e4
  • 1.50e4
46.85
  • 46.85
  • 39.02
  • 36.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
  • 1.34e4
  • 1.36e4
  • 1.54e4
  • 1.56e4
46.38
  • 46.38
  • 43.40
  • 42.48
  • 34.75
  • 33.93
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.27e4
  • 1.27e4
46.33
  • 46.33
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
  • 1.28e4
46.19
  • 46.19
  • 45.77
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.66
  • 44.66
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.56
  • 40.56
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.40e4
  • 1.40e4
40.49
  • 40.49
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.28
  • 40.28
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.42e4
  • 1.42e4
39.82
  • 39.82
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
39.52
  • 39.52
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
38.39
  • 38.39
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.46e4
  • 1.46e4
38.18
  • 38.18
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.50e4
  • 1.50e4
  • 1.57e4
  • 1.75e4
36.37
  • 36.37
  • 33.40
  • 25.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.52e4
  • 1.52e4
35.43
  • 35.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000000297.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000000297.

Cross-references

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