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S. scrofa Gene: - ENSSSCG00000000367 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000000367
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)9 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
3.96e3
  • 3.96e3
  • 4.88e3
83.22
  • 83.22
  • 79.33
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.31e3
  • 5.31e3
  • 9.18e3
  • 9.80e3
  • 9.83e3
  • 1.09e4
77.49
  • 77.49
  • 61.11
  • 58.47
  • 58.33
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.53e3
  • 5.53e3
76.55
  • 76.55
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
5.84e3
  • 5.84e3
  • 9.87e3
  • 1.24e4
75.26
  • 75.26
  • 58.16
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
6.10e3
  • 6.10e3
74.16
  • 74.16
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
6.60e3
  • 6.60e3
  • 6.89e3
  • 1.00e4
72.01
  • 72.01
  • 70.81
  • 57.52
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.76e3
  • 6.76e3
  • 1.22e4
71.35
  • 71.35
  • 48.34
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.21e3
  • 7.21e3
  • 8.10e3
  • 8.23e3
  • 9.14e3
69.44
  • 69.44
  • 65.68
  • 65.13
  • 61.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.69e3
  • 7.69e3
67.39
  • 67.39
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.08e3
  • 8.08e3
65.74
  • 65.74
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
8.11e3
  • 8.11e3
65.64
  • 65.64
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.11e3
  • 8.11e3
  • 1.11e4
65.64
  • 65.64
  • 52.77
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.11e3
  • 8.11e3
65.63
  • 65.63
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.32e3
  • 8.32e3
64.73
  • 64.73
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.43e3
  • 8.43e3
64.25
  • 64.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.69e3
  • 8.69e3
  • 1.04e4
  • 1.11e4
63.15
  • 63.15
  • 55.74
  • 52.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.99e3
  • 8.99e3
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
9.30e3
  • 9.30e3
  • 1.03e4
  • 1.06e4
60.59
  • 60.59
  • 56.36
  • 55.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.37e3
  • 9.37e3
60.29
  • 60.29
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.38e3
  • 9.38e3
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
9.72e3
  • 9.72e3
  • 1.10e4
  • 1.28e4
58.80
  • 58.80
  • 53.32
  • 45.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
9.72e3
  • 9.72e3
  • 1.04e4
  • 1.27e4
58.79
  • 58.79
  • 55.73
  • 46.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.87e3
  • 9.87e3
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.90e3
  • 9.90e3
58.04
  • 58.04
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
9.97e3
  • 9.97e3
57.75
  • 57.75
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.96
  • 56.96
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.34
  • 56.34
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.04e4
  • 1.04e4
  • 1.13e4
55.94
  • 55.94
  • 52.01
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.54
  • 54.54
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.27
  • 54.27
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.94
  • 53.94
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
53.13
  • 53.13
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.84
  • 51.84
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.44
  • 50.44
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.19e4
  • 1.19e4
49.50
  • 49.50
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.26
  • 49.26
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.06
  • 49.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.20e4
  • 1.20e4
49.00
  • 49.00
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.82
  • 48.82
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.23e4
  • 1.23e4
47.82
  • 47.82
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.79
  • 47.79
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.60
  • 45.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
45.53
  • 45.53
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.26
  • 44.26
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.58
  • 43.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000000367.

Cross-references

EnsemblENSSSCG00000000367
EMBLCU606916
Uniprot/SPTREMBLF1SPJ2, F1SPJ2_PIG

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