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S. scrofa Gene: C6orf229 - ENSSSCG00000001096 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000001096
NameC6orf229
Descriptionchromosome 6 open reading frame 229 [Source:HGNC Symbol;Acc:HGNC:49394]
OrganismSus scrofa (pig)
Orthologs(s)9 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.86e3
  • 1.86e3
  • 2.36e3
92.10
  • 92.10
  • 89.99
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
8.33e3
  • 8.33e3
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.08e4
  • 1.08e4
54.25
  • 54.25
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.65e4
  • 1.65e4
30.25
  • 30.25
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
  • 1.89e4
29.93
  • 29.93
  • 19.79
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.74e4
  • 1.74e4
26.38
  • 26.38
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.76e4
  • 1.76e4
25.23
  • 25.23
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.84e4
  • 1.84e4
22.16
  • 22.16
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.88e4
  • 1.88e4
  • 2.16e4
20.40
  • 20.40
  • 8.32
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
1.89e4
  • 1.89e4
  • 1.94e4
20.00
  • 20.00
  • 17.75
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
1.90e4
  • 1.90e4
  • 1.96e4
  • 2.17e4
19.57
  • 19.57
  • 16.93
  • 8.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.94e4
  • 1.94e4
  • 2.06e4
17.97
  • 17.97
  • 12.74
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.97e4
  • 1.97e4
16.31
  • 16.31
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
2.09e4
  • 2.09e4
11.57
  • 11.57
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria7 species7 genesCompare expression
Theria8 species8 genesCompare expression
Amniota9 species9 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000001096.

Cross-references

EnsemblENSSSCG00000001096 (C6orf229)
HGNCHGNC:49394 (C6orf229)
EMBLCT737315
Uniprot/SPTREMBLF1RUD7, F1RUD7_PIG

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