S. scrofa Gene: APOM - ENSSSCG00000001411 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000001411
NameAPOM
DescriptionApolipoprotein M [Source:UniProtKB/Swiss-Prot;Acc:Q2LE37]
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
498
  • 498
  • 848
  • 3.99e3
97.89
  • 97.89
  • 96.41
  • 83.08
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
737
  • 737
96.88
  • 96.88
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.06e3
  • 1.06e3
  • 6.60e3
95.53
  • 95.53
  • 72.03
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.19e3
  • 1.19e3
94.96
  • 94.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.69e3
  • 4.69e3
  • 1.13e4
80.14
  • 80.14
  • 52.20
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
7.97e3
  • 7.97e3
66.23
  • 66.23
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
9.63e3
  • 9.63e3
59.17
  • 59.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.00e4
  • 1.00e4
  • 1.32e4
  • 1.60e4
57.59
  • 57.59
  • 44.08
  • 32.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.00e4
  • 1.00e4
  • 1.23e4
  • 1.24e4
57.58
  • 57.58
  • 47.82
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.00e4
  • 1.00e4
57.52
  • 57.52
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.07
  • 57.07
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.31
  • 55.31
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.12e4
  • 1.12e4
52.54
  • 52.54
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.53
  • 52.53
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.13e4
  • 1.13e4
52.27
  • 52.27
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.24
  • 52.24
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.85
  • 50.85
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.16e4
  • 1.16e4
  • 1.38e4
50.62
  • 50.62
  • 41.58
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.21e4
  • 1.21e4
48.86
  • 48.86
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
48.66
  • 48.66
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.61
  • 48.61
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.52
  • 48.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
48.29
  • 48.29
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.22e4
  • 1.22e4
  • 1.34e4
  • 1.41e4
  • 1.44e4
  • 1.47e4
48.09
  • 48.09
  • 43.02
  • 40.36
  • 39.01
  • 37.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.69
  • 47.69
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.86
  • 46.86
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.40
  • 46.40
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
  • 1.47e4
  • 1.55e4
46.22
  • 46.22
  • 37.57
  • 34.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.27e4
  • 1.27e4
46.11
  • 46.11
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.05
  • 46.05
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.57
  • 45.57
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.91
  • 44.91
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.80
  • 43.80
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.25
  • 43.25
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
42.79
  • 42.79
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.52e4
  • 1.76e4
40.97
  • 40.97
  • 36.71
  • 35.57
  • 25.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.40e4
  • 1.40e4
  • 1.46e4
40.80
  • 40.80
  • 37.99
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
39.78
  • 39.78
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.40
  • 39.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
1.45e4
  • 1.45e4
38.42
  • 38.42
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
37.40
  • 37.40
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
  • 1.50e4
37.08
  • 37.08
  • 36.40
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.64e4
  • 1.64e4
30.39
  • 30.39
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
29.07
  • 29.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000001411.

Cross-references

EnsemblENSSSCG00000001411 (APOM)
EMBLBX548169, CU467793, DQ272488, DQ329240
Uniprot/SPTREMBLA5D9L6, A5D9L6_PIG
Uniprot/SWISSPROTAPOM_PIG, Q2LE37

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