S. scrofa Gene: - ENSSSCG00000001729 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000001729
Name-
Description-
OrganismSus scrofa (pig)
Synonym(s)ptchd4
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.25
  • 41.25
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
39.17
  • 39.17
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.46e4
  • 1.46e4
38.23
  • 38.23
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.47e4
  • 1.47e4
37.69
  • 37.69
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
1.54e4
  • 1.54e4
34.83
  • 34.83
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.55
  • 34.55
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.43
  • 34.43
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
29.80
  • 29.80
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
  • 1.67e4
  • 1.70e4
  • 1.92e4
29.26
  • 29.26
  • 29.26
  • 27.90
  • 18.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.71e4
  • 1.71e4
27.51
  • 27.51
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.72e4
  • 1.72e4
26.94
  • 26.94
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
  • 1.82e4
  • 2.02e4
26.77
  • 26.77
  • 22.82
  • 14.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
25.90
  • 25.90
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.76e4
  • 1.76e4
  • 1.95e4
  • 1.97e4
25.41
  • 25.41
  • 17.31
  • 16.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.78e4
  • 1.78e4
24.74
  • 24.74
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.79e4
  • 1.79e4
24.33
  • 24.33
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.80e4
  • 1.80e4
23.78
  • 23.78
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.99e4
  • 1.99e4
15.83
  • 15.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Theria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000001729.

Cross-references

EnsemblENSSSCG00000001729
EMBLCU012035
Uniprot/SPTREMBLI3LAS4, I3LAS4_PIG

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