S. scrofa Gene: RPGRIP1 - ENSSSCG00000002129 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000002129
NameRPGRIP1
Descriptionretinitis pigmentosa GTPase regulator interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:13436]
OrganismSus scrofa (pig)
Synonym(s)cord13, lca6, rgi1, rpgrip
Orthologs(s)13 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
281
  • 281
  • 440
98.81
  • 98.81
  • 98.14
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
987
  • 987
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.02e4
  • 1.02e4
  • 1.66e4
  • 1.80e4
56.69
  • 56.69
  • 29.71
  • 23.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.28e4
47.51
  • 47.51
  • 45.77
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.75e4
46.59
  • 46.59
  • 25.85
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.34e4
  • 1.64e4
46.50
  • 46.50
  • 43.16
  • 30.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.54
  • 44.54
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.36e4
  • 1.36e4
  • 1.41e4
42.29
  • 42.29
  • 40.14
AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.82
  • 40.82
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
  • 1.72e4
  • 1.83e4
  • 1.83e4
40.06
  • 40.06
  • 27.15
  • 22.50
  • 22.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.26
  • 39.26
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.47
  • 38.47
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.48e4
  • 1.48e4
37.42
  • 37.42
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.16
  • 37.16
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.49e4
  • 1.49e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.50e4
  • 1.50e4
  • 1.53e4
36.57
  • 36.57
  • 35.06
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
36.56
  • 36.56
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.00
  • 36.00
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.52e4
  • 1.52e4
35.52
  • 35.52
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
  • 1.66e4
35.15
  • 35.15
  • 29.68
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
34.87
  • 34.87
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.55e4
  • 1.55e4
34.42
  • 34.42
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.56e4
  • 1.56e4
34.04
  • 34.04
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.59e4
  • 1.59e4
  • 1.60e4
  • 1.60e4
  • 1.81e4
32.62
  • 32.62
  • 32.31
  • 32.30
  • 23.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.61e4
  • 1.61e4
  • 1.64e4
  • 1.86e4
31.65
  • 31.65
  • 30.68
  • 21.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.68e4
  • 1.68e4
28.99
  • 28.99
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.70e4
  • 1.70e4
27.82
  • 27.82
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.73e4
  • 1.73e4
26.88
  • 26.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.73e4
  • 1.73e4
26.57
  • 26.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.78e4
  • 1.78e4
  • 2.06e4
  • 2.06e4
24.70
  • 24.70
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
23.92
  • 23.92
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.81e4
  • 1.81e4
23.28
  • 23.28
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.83e4
  • 1.83e4
22.46
  • 22.46
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000002129.

Cross-references

EnsemblENSSSCG00000002129 (RPGRIP1)
HGNCHGNC:13436 (RPGRIP1)
EMBLCT797461
Uniprot/SPTREMBLF1S8J2, F1S8J2_PIG

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