S. scrofa Gene: SPTLC2 - ENSSSCG00000002404 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000002404
NameSPTLC2
Descriptionserine palmitoyltransferase, long chain base subunit 2 [Source:HGNC Symbol;Acc:HGNC:11278]
OrganismSus scrofa (pig)
Synonym(s)hlcb2a, kiaa0526, lcb2, lcb2a
Orthologs(s)27 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.65e3
  • 1.65e3
  • 2.12e3
  • 3.37e3
93.01
  • 93.01
  • 91.03
  • 85.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.81e3
  • 1.81e3
92.35
  • 92.35
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.96e3
  • 1.96e3
91.69
  • 91.69
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.21e3
  • 2.21e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
3.07e3
  • 3.07e3
86.98
  • 86.98
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.27e3
  • 3.27e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
3.51e3
  • 3.51e3
85.11
  • 85.11
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
3.56e3
  • 3.56e3
84.90
  • 84.90
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
3.98e3
  • 3.98e3
83.12
  • 83.12
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
4.12e3
  • 4.12e3
  • 5.17e3
  • 5.74e3
82.53
  • 82.53
  • 78.08
  • 75.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
4.51e3
  • 4.51e3
  • 5.37e3
80.87
  • 80.87
  • 77.25
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
4.56e3
  • 4.56e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
4.68e3
  • 4.68e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
4.81e3
  • 4.81e3
79.62
  • 79.62
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
4.92e3
  • 4.92e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.30e3
  • 5.30e3
  • 5.40e3
  • 6.33e3
77.53
  • 77.53
  • 77.10
  • 73.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
5.37e3
  • 5.37e3
77.24
  • 77.24
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
5.72e3
  • 5.72e3
75.78
  • 75.78
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.00e3
  • 6.00e3
  • 6.96e3
74.58
  • 74.58
  • 70.52
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.41e3
  • 6.41e3
72.84
  • 72.84
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.50e3
  • 6.50e3
  • 8.14e3
72.46
  • 72.46
  • 65.52
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.50e3
  • 6.50e3
  • 8.52e3
72.43
  • 72.43
  • 63.89
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.60e3
  • 6.60e3
72.01
  • 72.01
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.66e3
  • 6.66e3
  • 9.56e3
  • 1.24e4
71.75
  • 71.75
  • 59.49
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
6.68e3
  • 6.68e3
71.71
  • 71.71
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.77e3
  • 6.77e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
6.79e3
  • 6.79e3
71.23
  • 71.23
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.84e3
  • 6.84e3
71.03
  • 71.03
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
6.98e3
  • 6.98e3
70.40
  • 70.40
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
7.01e3
  • 7.01e3
  • 7.22e3
  • 7.63e3
  • 7.84e3
70.29
  • 70.29
  • 69.39
  • 67.67
  • 66.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
7.49e3
  • 7.49e3
68.26
  • 68.26
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.65e3
  • 7.65e3
67.57
  • 67.57
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.80e3
  • 7.80e3
66.92
  • 66.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.92e3
  • 7.92e3
  • 8.70e3
  • 9.56e3
66.42
  • 66.42
  • 63.11
  • 59.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
7.95e3
  • 7.95e3
  • 9.15e3
66.31
  • 66.31
  • 61.23
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
7.95e3
  • 7.95e3
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
8.33e3
  • 8.33e3
64.68
  • 64.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.46e3
  • 8.46e3
  • 9.02e3
  • 1.10e4
64.16
  • 64.16
  • 61.76
  • 53.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000068embryo stage
8.75e3
  • 8.75e3
  • 9.58e3
  • 9.87e3
  • 9.96e3
  • 1.16e4
62.90
  • 62.90
  • 59.38
  • 58.16
  • 57.78
  • 50.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.10e3
  • 9.10e3
61.42
  • 61.42
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
9.71e3
  • 9.71e3
58.83
  • 58.83
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.41
  • 57.41
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.59
  • 56.59
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.32
  • 56.32
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.06e4
  • 1.06e4
55.19
  • 55.19
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.88
  • 53.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.15e4
  • 1.15e4
  • 1.16e4
51.10
  • 51.10
  • 50.70
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000002404.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Eukaryota3 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000002404.

Cross-references

EnsemblENSSSCG00000002404 (SPTLC2)
HGNCHGNC:11278 (SPTLC2)
EMBLCU468695
Uniprot/SPTREMBLF1SE08, F1SE08_PIG

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