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S. scrofa Gene: - ENSSSCG00000002547 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000002547
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)26 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
159
  • 159
  • 532
99.33
  • 99.33
  • 97.75
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
208
  • 208
99.12
  • 99.12
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
227
  • 227
  • 261
  • 278
  • 321
99.04
  • 99.04
  • 98.90
  • 98.82
  • 98.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
233
  • 233
  • 597
99.02
  • 99.02
  • 97.47
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
248
  • 248
98.95
  • 98.95
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
274
  • 274
98.84
  • 98.84
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
368
  • 368
98.44
  • 98.44
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
373
  • 373
98.42
  • 98.42
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
402
  • 402
98.30
  • 98.30
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
461
  • 461
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
526
  • 526
  • 1.27e3
  • 1.46e3
97.77
  • 97.77
  • 94.64
  • 93.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
571
  • 571
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
670
  • 670
97.16
  • 97.16
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
759
  • 759
96.79
  • 96.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
928
  • 928
96.07
  • 96.07
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.00e3
  • 1.00e3
  • 1.07e3
  • 1.16e3
  • 1.19e3
  • 1.56e3
95.75
  • 95.75
  • 95.48
  • 95.09
  • 94.94
  • 93.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.01e3
  • 1.01e3
95.72
  • 95.72
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.14e3
  • 1.14e3
  • 6.02e3
95.19
  • 95.19
  • 74.48
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.17e3
  • 1.17e3
95.06
  • 95.06
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.17e3
  • 1.17e3
  • 1.21e3
  • 1.40e3
95.03
  • 95.03
  • 94.87
  • 94.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.18e3
  • 1.18e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.23e3
  • 1.23e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.25e3
  • 1.25e3
  • 1.53e3
  • 1.24e4
94.72
  • 94.72
  • 93.52
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.51e3
  • 1.51e3
  • 1.67e3
  • 1.89e3
93.60
  • 93.60
  • 92.93
  • 92.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.53e3
  • 1.53e3
  • 1.90e3
93.50
  • 93.50
  • 91.95
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.60e3
  • 1.60e3
93.23
  • 93.23
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.60e3
  • 1.60e3
93.20
  • 93.20
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.71e3
  • 1.71e3
92.77
  • 92.77
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.73e3
  • 1.73e3
  • 1.84e3
92.68
  • 92.68
  • 92.19
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.81e3
  • 1.81e3
  • 4.20e3
  • 4.22e3
92.35
  • 92.35
  • 82.20
  • 82.10
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.83e3
  • 1.83e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.94e3
  • 1.94e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.09e3
  • 2.09e3
  • 2.16e3
  • 2.94e3
91.14
  • 91.14
  • 90.86
  • 87.54
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
2.13e3
  • 2.13e3
90.97
  • 90.97
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.22e3
  • 2.22e3
90.59
  • 90.59
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.25e3
  • 2.25e3
90.47
  • 90.47
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.37e3
  • 2.37e3
89.97
  • 89.97
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
2.42e3
  • 2.42e3
89.75
  • 89.75
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
2.54e3
  • 2.54e3
89.25
  • 89.25
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.94e3
  • 2.94e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
3.00e3
  • 3.00e3
87.28
  • 87.28
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
3.32e3
  • 3.32e3
85.94
  • 85.94
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.66e3
  • 3.66e3
  • 4.22e3
84.50
  • 84.50
  • 82.10
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.76e3
  • 3.76e3
84.08
  • 84.08
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
3.83e3
  • 3.83e3
83.78
  • 83.78
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.04e3
  • 4.04e3
82.86
  • 82.86
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
4.19e3
  • 4.19e3
82.23
  • 82.23
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
4.38e3
  • 4.38e3
81.45
  • 81.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species14 genesCompare expression
Mammalia14 species15 genesCompare expression
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000002547.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Metazoa2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000002547.

Cross-references

EnsemblENSSSCG00000002547
EMBLCU694215
Uniprot/SPTREMBLF1S9W8, F1S9W8_PIG

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