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S. scrofa Gene: CDH11 - ENSSSCG00000002795 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000002795
NameCDH11
Descriptioncadherin 11, type 2, OB-cadherin (osteoblast) [Source:HGNC Symbol;Acc:HGNC:1750]
OrganismSus scrofa (pig)
Orthologs(s)19 orthologs
Paralog(s)8 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
138
  • 138
99.42
  • 99.42
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
634
  • 634
97.32
  • 97.32
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
675
  • 675
  • 692
97.14
  • 97.14
  • 97.07
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
920
  • 920
96.11
  • 96.11
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
1.04e3
  • 1.04e3
  • 4.30e3
  • 6.84e3
95.58
  • 95.58
  • 81.76
  • 71.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.30e3
  • 1.30e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.43e3
  • 1.43e3
  • 2.32e3
  • 4.39e3
93.93
  • 93.93
  • 90.19
  • 81.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.45e3
  • 1.45e3
93.84
  • 93.84
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.75e3
  • 1.75e3
92.57
  • 92.57
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.79e3
  • 1.79e3
92.40
  • 92.40
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.86e3
  • 1.86e3
  • 3.64e3
  • 4.62e3
92.11
  • 92.11
  • 84.57
  • 80.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
2.10e3
  • 2.10e3
  • 9.79e3
  • 1.24e4
91.09
  • 91.09
  • 58.50
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
2.23e3
  • 2.23e3
90.53
  • 90.53
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.32e3
  • 2.32e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.36e3
  • 2.36e3
  • 5.71e3
89.98
  • 89.98
  • 75.79
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.43e3
  • 2.43e3
89.68
  • 89.68
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.52e3
  • 2.52e3
89.31
  • 89.31
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.90e3
  • 2.90e3
87.70
  • 87.70
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
3.03e3
  • 3.03e3
87.14
  • 87.14
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
3.52e3
  • 3.52e3
  • 3.62e3
  • 3.65e3
  • 4.48e3
85.07
  • 85.07
  • 84.65
  • 84.53
  • 81.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
3.65e3
  • 3.65e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.89e3
  • 3.89e3
  • 6.13e3
83.50
  • 83.50
  • 74.02
AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
4.03e3
  • 4.03e3
82.91
  • 82.91
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
4.36e3
  • 4.36e3
  • 6.33e3
  • 7.65e3
  • 8.31e3
  • 9.03e3
81.50
  • 81.50
  • 73.16
  • 67.58
  • 64.79
  • 61.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
4.45e3
  • 4.45e3
81.12
  • 81.12
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
4.86e3
  • 4.86e3
79.41
  • 79.41
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
5.04e3
  • 5.04e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.11e3
  • 5.11e3
78.33
  • 78.33
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.25e3
  • 5.25e3
  • 8.59e3
77.77
  • 77.77
  • 63.60
AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
5.59e3
  • 5.59e3
76.29
  • 76.29
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.61e3
  • 5.61e3
76.21
  • 76.21
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
5.69e3
  • 5.69e3
  • 6.35e3
75.88
  • 75.88
  • 73.11
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.76e3
  • 6.76e3
  • 7.69e3
71.36
  • 71.36
  • 67.41
AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
7.05e3
  • 7.05e3
70.12
  • 70.12
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
7.06e3
  • 7.06e3
70.09
  • 70.09
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.12e3
  • 7.12e3
69.82
  • 69.82
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
7.17e3
  • 7.17e3
69.63
  • 69.63
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.45e3
  • 8.45e3
64.17
  • 64.17
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.21e3
  • 9.21e3
60.96
  • 60.96
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
9.42e3
  • 9.42e3
  • 1.03e4
  • 1.05e4
60.06
  • 60.06
  • 56.35
  • 55.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.81e3
  • 9.81e3
58.44
  • 58.44
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
9.82e3
  • 9.82e3
  • 1.08e4
  • 1.25e4
58.39
  • 58.39
  • 54.24
  • 47.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.89
  • 53.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.11e4
  • 1.11e4
53.00
  • 53.00
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
44.07
  • 44.07
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.72e4
  • 1.72e4
27.27
  • 27.27
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species14 genesCompare expression
Mammalia14 species15 genesCompare expression
Amniota16 species17 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000002795.

Paralogs (same species)

Paralogy information comes from OMA : ENSSSCG00000002795.

Cross-references

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