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S. scrofa Gene: RABAC1 - ENSSSCG00000003046 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003046
NameRABAC1
DescriptionRab acceptor 1 (prenylated) [Source:HGNC Symbol;Acc:HGNC:9794]
OrganismSus scrofa (pig)
Synonym(s)pra1, praf1, yip3
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
281
  • 281
  • 293
98.81
  • 98.81
  • 98.76
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0034919juvenile stage
307
  • 307
  • 448
  • 2.58e3
98.70
  • 98.70
  • 98.11
  • 89.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
320
  • 320
  • 3.34e3
  • 1.24e4
98.65
  • 98.65
  • 85.85
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
347
  • 347
98.53
  • 98.53
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
356
  • 356
98.49
  • 98.49
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
363
  • 363
  • 632
  • 697
  • 962
  • 5.03e3
98.47
  • 98.47
  • 97.33
  • 97.05
  • 95.93
  • 78.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
414
  • 414
98.25
  • 98.25
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
464
  • 464
  • 3.05e3
98.04
  • 98.04
  • 87.07
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
496
  • 496
  • 693
  • 5.27e3
97.90
  • 97.90
  • 97.07
  • 77.68
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
552
  • 552
  • 683
  • 2.70e3
97.66
  • 97.66
  • 97.11
  • 88.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
566
  • 566
97.60
  • 97.60
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
572
  • 572
  • 3.60e3
97.58
  • 97.58
  • 84.74
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
600
  • 600
97.46
  • 97.46
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
639
  • 639
97.29
  • 97.29
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
655
  • 655
97.23
  • 97.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
655
  • 655
  • 762
  • 855
97.23
  • 97.23
  • 96.77
  • 96.38
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
659
  • 659
  • 7.45e3
97.21
  • 97.21
  • 68.44
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
660
  • 660
  • 4.16e3
97.21
  • 97.21
  • 82.39
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
683
  • 683
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
687
  • 687
  • 770
  • 923
  • 1.69e3
97.09
  • 97.09
  • 96.74
  • 96.09
  • 92.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
691
  • 691
  • 3.04e3
97.07
  • 97.07
  • 87.12
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
697
  • 697
97.05
  • 97.05
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
787
  • 787
96.67
  • 96.67
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
787
  • 787
96.67
  • 96.67
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
806
  • 806
96.59
  • 96.59
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
832
  • 832
96.48
  • 96.48
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
904
  • 904
  • 1.15e3
  • 5.17e3
96.17
  • 96.17
  • 95.14
  • 78.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
965
  • 965
95.91
  • 95.91
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
985
  • 985
95.83
  • 95.83
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.05e3
  • 1.05e3
95.56
  • 95.56
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.09e3
  • 1.09e3
95.38
  • 95.38
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.33e3
  • 1.33e3
94.35
  • 94.35
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.60e3
  • 1.60e3
93.23
  • 93.23
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.62e3
  • 1.62e3
93.14
  • 93.14
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.66e3
  • 1.66e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.74e3
  • 1.74e3
92.63
  • 92.63
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.79e3
  • 1.79e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.82e3
  • 1.82e3
92.29
  • 92.29
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.88e3
  • 1.88e3
92.03
  • 92.03
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.99e3
  • 1.99e3
91.58
  • 91.58
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
90.13
  • 90.13
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
2.46e3
  • 2.46e3
89.59
  • 89.59
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.53e3
  • 2.53e3
89.27
  • 89.27
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.56e3
  • 2.56e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.74e3
  • 2.74e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
3.24e3
  • 3.24e3
86.26
  • 86.26
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
3.79e3
  • 3.79e3
83.95
  • 83.95
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
3.93e3
  • 3.93e3
83.36
  • 83.36
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species15 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003046.

Cross-references

EnsemblENSSSCG00000003046 (RABAC1)
HGNCHGNC:9794 (RABAC1)
EMBLFP015926
Uniprot/SPTREMBLF1RMX2, F1RMX2_PIG

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