S. scrofa Gene: ZNF541 - ENSSSCG00000003119 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003119
NameZNF541
Descriptionzinc finger protein 541 [Source:HGNC Symbol;Acc:HGNC:25294]
OrganismSus scrofa (pig)
Synonym(s)dkfzp434i1930
Orthologs(s)12 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.37e3
  • 3.37e3
  • 6.24e3
85.73
  • 85.73
  • 73.54
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.76
  • 50.76
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.45e4
  • 1.45e4
38.61
  • 38.61
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.62e4
  • 1.62e4
31.29
  • 31.29
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.64e4
  • 1.64e4
30.30
  • 30.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.66e4
  • 1.66e4
29.84
  • 29.84
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
1.66e4
  • 1.66e4
29.71
  • 29.71
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
1.67e4
  • 1.67e4
29.13
  • 29.13
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
29.02
  • 29.02
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.68e4
  • 1.68e4
28.89
  • 28.89
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.68e4
  • 1.68e4
28.66
  • 28.66
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.69e4
  • 1.69e4
28.29
  • 28.29
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.72e4
  • 1.72e4
  • 1.73e4
  • 1.83e4
27.22
  • 27.22
  • 26.55
  • 22.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.77e4
  • 1.77e4
25.15
  • 25.15
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.78e4
  • 1.78e4
  • 1.79e4
  • 1.86e4
24.36
  • 24.36
  • 24.08
  • 21.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.81e4
  • 1.81e4
  • 1.86e4
23.39
  • 23.39
  • 21.11
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.86e4
  • 1.86e4
  • 1.90e4
21.15
  • 21.15
  • 19.34
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.92e4
  • 1.92e4
18.68
  • 18.68
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.93e4
  • 1.93e4
18.31
  • 18.31
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003119.

Cross-references

EnsemblENSSSCG00000003119 (ZNF541)
HGNCHGNC:25294 (ZNF541)
EMBLFP104555
Uniprot/SPTREMBLF1RLY3, F1RLY3_PIG, F1RLY4, F1RLY4_PIG, I3LLB8, I3LLB8_PIG

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