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S. scrofa Gene: NR1H2 - ENSSSCG00000003211 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003211
NameNR1H2
Descriptionnuclear receptor subfamily 1 group H member 2 [Source:HGNC Symbol;Acc:HGNC:7965]
OrganismSus scrofa (pig)
Synonym(s)lxr-b, ner, ner-i, rip15, unr
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.21e3
  • 1.21e3
  • 3.35e3
  • 3.99e3
94.88
  • 94.88
  • 85.81
  • 83.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.32e3
  • 1.32e3
  • 3.23e3
  • 6.87e3
94.39
  • 94.39
  • 86.32
  • 70.89
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.33e3
  • 1.33e3
94.35
  • 94.35
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.50e3
  • 1.50e3
93.67
  • 93.67
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.65e3
  • 1.65e3
  • 2.96e3
  • 1.24e4
93.01
  • 93.01
  • 87.47
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.74e3
  • 1.74e3
92.61
  • 92.61
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.79e3
  • 1.79e3
  • 1.81e3
  • 2.13e3
92.43
  • 92.43
  • 92.34
  • 90.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
1.98e3
  • 1.98e3
  • 2.06e3
  • 3.29e3
  • 3.91e3
  • 5.04e3
91.62
  • 91.62
  • 91.25
  • 86.05
  • 83.41
  • 78.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.08e3
  • 2.08e3
  • 5.96e3
91.20
  • 91.20
  • 74.75
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.16e3
  • 2.16e3
90.86
  • 90.86
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.16e3
  • 2.16e3
90.84
  • 90.84
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.25e3
  • 2.25e3
  • 6.72e3
90.48
  • 90.48
  • 71.54
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
2.25e3
  • 2.25e3
  • 2.59e3
  • 3.57e3
90.46
  • 90.46
  • 89.04
  • 84.88
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.26e3
  • 2.26e3
  • 4.01e3
90.43
  • 90.43
  • 83.00
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.27e3
  • 2.27e3
  • 2.41e3
  • 4.25e3
90.37
  • 90.37
  • 89.81
  • 81.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
2.36e3
  • 2.36e3
89.99
  • 89.99
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.37e3
  • 2.37e3
  • 2.38e3
89.94
  • 89.94
  • 89.91
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
2.40e3
  • 2.40e3
  • 3.78e3
89.81
  • 89.81
  • 84.00
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.73e3
  • 2.73e3
88.45
  • 88.45
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
2.83e3
  • 2.83e3
  • 3.22e3
  • 3.60e3
  • 3.84e3
88.01
  • 88.01
  • 86.36
  • 84.75
  • 83.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.86e3
  • 2.86e3
87.87
  • 87.87
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
2.87e3
  • 2.87e3
87.83
  • 87.83
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.88e3
  • 2.88e3
87.79
  • 87.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.43e3
  • 3.43e3
  • 4.39e3
85.48
  • 85.48
  • 81.40
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.05e3
  • 4.05e3
82.82
  • 82.82
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
4.38e3
  • 4.38e3
81.43
  • 81.43
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
5.17e3
  • 5.17e3
78.11
  • 78.11
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
5.22e3
  • 5.22e3
77.89
  • 77.89
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
5.24e3
  • 5.24e3
77.80
  • 77.80
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
5.30e3
  • 5.30e3
77.53
  • 77.53
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
5.33e3
  • 5.33e3
77.43
  • 77.43
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
5.65e3
  • 5.65e3
76.05
  • 76.05
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
6.00e3
  • 6.00e3
74.58
  • 74.58
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.00e3
  • 6.00e3
74.55
  • 74.55
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.01e3
  • 6.01e3
74.54
  • 74.54
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
6.01e3
  • 6.01e3
74.52
  • 74.52
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
6.13e3
  • 6.13e3
74.02
  • 74.02
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.29e3
  • 6.29e3
73.34
  • 73.34
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
6.30e3
  • 6.30e3
73.29
  • 73.29
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
6.37e3
  • 6.37e3
72.99
  • 72.99
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.57e3
  • 6.57e3
72.15
  • 72.15
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.68e3
  • 6.68e3
71.67
  • 71.67
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
6.73e3
  • 6.73e3
71.48
  • 71.48
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
6.74e3
  • 6.74e3
71.43
  • 71.43
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
6.97e3
  • 6.97e3
70.47
  • 70.47
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
7.09e3
  • 7.09e3
69.96
  • 69.96
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
8.55e3
  • 8.55e3
63.78
  • 63.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003211.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000003211.

Cross-references

EnsemblENSSSCG00000003211 (NR1H2)
HGNCHGNC:7965 (NR1H2)
EMBLFP102476
Uniprot/SPTREMBLF1RH38, F1RH38_PIG

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