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S. scrofa Gene: JOSD2 - ENSSSCG00000003217 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003217
NameJOSD2
DescriptionJosephin domain containing 2 [Source:HGNC Symbol;Acc:HGNC:28853]
OrganismSus scrofa (pig)
Synonym(s)sbbi54
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.70e3
  • 1.70e3
92.80
  • 92.80
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.80e3
  • 1.80e3
92.37
  • 92.37
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.83e3
  • 1.83e3
  • 4.07e3
  • 4.11e3
  • 4.27e3
  • 8.48e3
92.23
  • 92.23
  • 82.73
  • 82.57
  • 81.92
  • 64.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.85e3
  • 1.85e3
92.15
  • 92.15
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.58e3
  • 2.58e3
  • 1.05e4
89.05
  • 89.05
  • 55.46
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.61e3
  • 2.61e3
88.94
  • 88.94
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.71e3
  • 2.71e3
  • 2.99e3
88.51
  • 88.51
  • 87.33
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.89e3
  • 2.89e3
  • 3.03e3
  • 4.15e3
  • 4.67e3
87.75
  • 87.75
  • 87.15
  • 82.41
  • 80.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
2.93e3
  • 2.93e3
87.57
  • 87.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.98e3
  • 2.98e3
  • 4.11e3
  • 4.17e3
87.38
  • 87.38
  • 82.59
  • 82.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
3.01e3
  • 3.01e3
  • 4.10e3
  • 5.22e3
87.26
  • 87.26
  • 82.62
  • 77.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
3.18e3
  • 3.18e3
86.53
  • 86.53
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
3.22e3
  • 3.22e3
86.35
  • 86.35
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
3.26e3
  • 3.26e3
86.19
  • 86.19
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
3.32e3
  • 3.32e3
  • 1.02e4
  • 1.24e4
85.92
  • 85.92
  • 56.78
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
3.62e3
  • 3.62e3
  • 1.26e4
84.65
  • 84.65
  • 46.42
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
3.64e3
  • 3.64e3
  • 5.17e3
84.57
  • 84.57
  • 78.09
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
3.73e3
  • 3.73e3
84.19
  • 84.19
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.12e3
  • 4.12e3
  • 1.02e4
82.53
  • 82.53
  • 56.88
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.18e3
  • 4.18e3
  • 1.21e4
82.26
  • 82.26
  • 48.69
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
4.59e3
  • 4.59e3
  • 5.86e3
  • 1.18e4
80.54
  • 80.54
  • 75.16
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.68e3
  • 4.68e3
  • 1.19e4
80.15
  • 80.15
  • 49.39
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
4.84e3
  • 4.84e3
79.47
  • 79.47
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
4.90e3
  • 4.90e3
79.25
  • 79.25
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
5.09e3
  • 5.09e3
78.44
  • 78.44
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
5.19e3
  • 5.19e3
78.00
  • 78.00
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.35e3
  • 5.35e3
  • 5.94e3
  • 1.05e4
77.35
  • 77.35
  • 74.84
  • 55.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
5.39e3
  • 5.39e3
77.17
  • 77.17
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
5.62e3
  • 5.62e3
76.19
  • 76.19
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
5.64e3
  • 5.64e3
76.09
  • 76.09
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.00e3
  • 6.00e3
74.55
  • 74.55
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
7.17e3
  • 7.17e3
69.62
  • 69.62
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
7.35e3
  • 7.35e3
68.86
  • 68.86
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.55e3
  • 7.55e3
67.99
  • 67.99
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
7.67e3
  • 7.67e3
67.51
  • 67.51
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.79e3
  • 7.79e3
66.97
  • 66.97
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
7.84e3
  • 7.84e3
66.76
  • 66.76
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.07e3
  • 8.07e3
65.81
  • 65.81
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.27e3
  • 8.27e3
64.93
  • 64.93
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
8.69e3
  • 8.69e3
63.17
  • 63.17
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.23e3
  • 9.23e3
60.88
  • 60.88
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.02
  • 57.02
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.89
  • 56.89
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.11
  • 55.11
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
52.92
  • 52.92
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.25
  • 52.25
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.15
  • 51.15
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.96
  • 49.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria3 species3 genesCompare expression
Boreoeutheria11 species11 genesCompare expression
Amniota12 species12 genesCompare expression
Euteleostomi13 species13 genesCompare expression
Bilateria20 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003217.

Cross-references

EnsemblENSSSCG00000003217 (JOSD2)
HGNCHGNC:28853 (JOSD2)
EMBLFP102476
Uniprot/SPTREMBLF1RH21, F1RH21_PIG

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