S. scrofa Gene: - ENSSSCG00000003420 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003420
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)23 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.23e3
  • 3.23e3
86.30
  • 86.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
3.88e3
  • 3.88e3
  • 4.38e3
  • 8.36e3
83.55
  • 83.55
  • 81.45
  • 64.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
4.27e3
  • 4.27e3
81.90
  • 81.90
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
4.50e3
  • 4.50e3
  • 5.23e3
  • 9.94e3
80.93
  • 80.93
  • 77.85
  • 57.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.17e3
  • 5.17e3
  • 1.16e4
78.11
  • 78.11
  • 50.73
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
5.21e3
  • 5.21e3
  • 5.66e3
77.90
  • 77.90
  • 76.02
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
5.39e3
  • 5.39e3
77.18
  • 77.18
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.61e3
  • 5.61e3
  • 7.98e3
76.23
  • 76.23
  • 66.18
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
5.68e3
  • 5.68e3
  • 5.78e3
  • 5.96e3
  • 8.37e3
75.92
  • 75.92
  • 75.50
  • 74.75
  • 64.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
5.80e3
  • 5.80e3
  • 6.58e3
  • 1.19e4
75.40
  • 75.40
  • 72.10
  • 49.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
5.89e3
  • 5.89e3
  • 1.03e4
  • 1.24e4
75.03
  • 75.03
  • 56.30
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
6.47e3
  • 6.47e3
  • 7.65e3
  • 9.87e3
72.56
  • 72.56
  • 67.56
  • 58.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
6.55e3
  • 6.55e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
6.63e3
  • 6.63e3
  • 8.22e3
  • 1.05e4
71.89
  • 71.89
  • 65.16
  • 55.38
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
6.82e3
  • 6.82e3
71.10
  • 71.10
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
6.86e3
  • 6.86e3
  • 7.11e3
  • 7.20e3
  • 7.76e3
  • 1.19e4
70.94
  • 70.94
  • 69.87
  • 69.50
  • 67.10
  • 49.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.88e3
  • 6.88e3
70.82
  • 70.82
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.04e3
  • 7.04e3
  • 1.08e4
70.17
  • 70.17
  • 54.28
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
7.09e3
  • 7.09e3
69.96
  • 69.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
7.14e3
  • 7.14e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.17e3
  • 7.17e3
  • 1.24e4
69.60
  • 69.60
  • 47.52
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.21e3
  • 7.21e3
69.43
  • 69.43
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
7.32e3
  • 7.32e3
68.98
  • 68.98
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
7.41e3
  • 7.41e3
68.58
  • 68.58
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
7.46e3
  • 7.46e3
68.37
  • 68.37
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
7.60e3
  • 7.60e3
67.80
  • 67.80
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
8.33e3
  • 8.33e3
  • 1.06e4
64.67
  • 64.67
  • 54.89
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.60e3
  • 8.60e3
63.55
  • 63.55
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
8.63e3
  • 8.63e3
63.41
  • 63.41
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
9.29e3
  • 9.29e3
60.61
  • 60.61
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
9.71e3
  • 9.71e3
58.84
  • 58.84
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
9.85e3
  • 9.85e3
58.26
  • 58.26
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
9.87e3
  • 9.87e3
58.16
  • 58.16
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.01e4
  • 1.01e4
57.26
  • 57.26
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.79
  • 55.79
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.61
  • 55.61
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.99
  • 53.99
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.96
  • 53.96
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.51
  • 51.51
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.20
  • 51.20
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.56
  • 50.56
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.05
  • 50.05
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.03
  • 49.03
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.21
  • 48.21
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.14
  • 48.14
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.10
  • 48.10
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.22
  • 47.22
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.54
  • 46.54
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.20
  • 46.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Theria11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species23 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003420.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Amniota1 geneCompare expression
Euteleostomi2 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000003420.

Cross-references

EnsemblENSSSCG00000003420
EMBLCU855519
Uniprot/SPTREMBLF1RF93, F1RF93_PIG

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