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S. scrofa Gene: ZSCAN30 - ENSSSCG00000003740 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003740
NameZSCAN30
Descriptionzinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:HGNC:33517]
OrganismSus scrofa (pig)
Synonym(s)znf397os, znf917
Orthologs(s)38 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.11e4
  • 1.11e4
53.00
  • 53.00
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.15e4
  • 1.15e4
51.40
  • 51.40
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.22e4
  • 1.22e4
48.38
  • 48.38
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
  • 1.27e4
47.74
  • 47.74
  • 46.27
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.60e4
47.51
  • 47.51
  • 32.23
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.00
  • 47.00
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
46.86
  • 46.86
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.27e4
  • 1.27e4
45.99
  • 45.99
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.38
  • 45.38
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.30e4
  • 1.30e4
44.75
  • 44.75
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
44.72
  • 44.72
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.33e4
  • 1.33e4
  • 1.49e4
43.67
  • 43.67
  • 36.91
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
  • 1.45e4
  • 1.46e4
  • 1.54e4
43.20
  • 43.20
  • 38.60
  • 38.02
  • 34.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.37e4
  • 1.37e4
42.09
  • 42.09
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
41.98
  • 41.98
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.39e4
  • 1.39e4
  • 1.45e4
41.15
  • 41.15
  • 38.49
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.41e4
  • 1.41e4
40.11
  • 40.11
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.42e4
  • 1.42e4
39.87
  • 39.87
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.66
  • 39.66
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.42e4
  • 1.42e4
  • 1.46e4
  • 1.51e4
  • 1.53e4
  • 1.54e4
39.62
  • 39.62
  • 38.16
  • 35.79
  • 35.22
  • 34.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.47
  • 38.47
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.47e4
  • 1.47e4
37.56
  • 37.56
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.47e4
  • 1.47e4
37.51
  • 37.51
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.48e4
  • 1.48e4
  • 1.48e4
  • 1.51e4
37.31
  • 37.31
  • 37.13
  • 35.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.48e4
  • 1.48e4
  • 1.55e4
  • 1.58e4
37.18
  • 37.18
  • 34.18
  • 33.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
  • 1.65e4
36.90
  • 36.90
  • 30.01
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
36.90
  • 36.90
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
35.90
  • 35.90
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.53e4
  • 1.53e4
35.02
  • 35.02
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.53e4
  • 1.53e4
  • 1.56e4
34.99
  • 34.99
  • 33.81
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.83
  • 34.83
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.55e4
  • 1.55e4
  • 1.62e4
34.36
  • 34.36
  • 31.48
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Tetrapoda5 genesCompare expression

Paralogy information comes from OMA : ENSSSCG00000003740.

Cross-references

EnsemblENSSSCG00000003740 (ZSCAN30)
HGNCHGNC:33517 (ZSCAN30)
EMBLCU463956
Uniprot/SPTREMBLF1SAJ7, F1SAJ7_PIG

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