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S. scrofa Gene: - ENSSSCG00000003812 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000003812
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)22 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
39.8
  • 39.8
  • 57.6
  • 100
  • 222
  • 486
99.84
  • 99.84
  • 99.76
  • 99.58
  • 99.06
  • 97.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
81.5
  • 81.5
99.66
  • 99.66
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
108
  • 108
99.54
  • 99.54
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
218
  • 218
99.08
  • 99.08
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
297
  • 297
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
480
  • 480
  • 951
  • 989
97.97
  • 97.97
  • 95.97
  • 95.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
481
  • 481
  • 848
  • 916
97.96
  • 97.96
  • 96.41
  • 96.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
786
  • 786
96.67
  • 96.67
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.21e3
  • 1.21e3
  • 1.66e3
94.90
  • 94.90
  • 92.98
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.21e3
  • 1.21e3
94.88
  • 94.88
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.24e3
  • 1.24e3
  • 2.81e3
94.73
  • 94.73
  • 88.09
AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.26e3
  • 1.26e3
94.66
  • 94.66
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.46e3
  • 1.46e3
93.81
  • 93.81
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.51e3
  • 1.51e3
  • 5.30e3
93.59
  • 93.59
  • 77.52
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.72e3
  • 1.72e3
  • 2.58e3
  • 2.70e3
  • 3.16e3
92.71
  • 92.71
  • 89.09
  • 88.55
  • 86.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.85e3
  • 1.85e3
92.17
  • 92.17
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.87e3
  • 1.87e3
  • 5.15e3
92.08
  • 92.08
  • 78.19
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.95e3
  • 1.95e3
91.73
  • 91.73
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.96e3
  • 1.96e3
91.72
  • 91.72
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.96e3
  • 1.96e3
  • 2.38e3
  • 1.24e4
91.71
  • 91.71
  • 89.92
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.06e3
  • 2.06e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.21e3
  • 2.21e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
  • 3.68e3
90.12
  • 90.12
  • 84.39
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.56e3
  • 2.56e3
  • 7.80e3
89.17
  • 89.17
  • 66.95
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.74e3
  • 2.74e3
88.40
  • 88.40
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.80e3
  • 2.80e3
  • 3.31e3
  • 8.55e3
88.12
  • 88.12
  • 85.99
  • 63.77
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
2.85e3
  • 2.85e3
  • 4.72e3
  • 5.85e3
87.93
  • 87.93
  • 80.00
  • 75.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.89e3
  • 2.89e3
87.76
  • 87.76
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
2.96e3
  • 2.96e3
87.45
  • 87.45
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
3.18e3
  • 3.18e3
86.52
  • 86.52
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
3.21e3
  • 3.21e3
  • 3.75e3
  • 5.77e3
86.39
  • 86.39
  • 84.11
  • 75.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
3.42e3
  • 3.42e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
3.65e3
  • 3.65e3
84.53
  • 84.53
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.71e3
  • 3.71e3
84.27
  • 84.27
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
3.76e3
  • 3.76e3
84.07
  • 84.07
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
3.92e3
  • 3.92e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
4.01e3
  • 4.01e3
83.02
  • 83.02
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
4.21e3
  • 4.21e3
82.17
  • 82.17
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
5.25e3
  • 5.25e3
77.76
  • 77.76
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
5.42e3
  • 5.42e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
5.56e3
  • 5.56e3
76.44
  • 76.44
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.04e3
  • 6.04e3
74.40
  • 74.40
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
6.44e3
  • 6.44e3
72.71
  • 72.71
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
6.72e3
  • 6.72e3
71.53
  • 71.53
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
6.77e3
  • 6.77e3
71.31
  • 71.31
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
6.77e3
  • 6.77e3
71.29
  • 71.29
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.05e3
  • 7.05e3
70.13
  • 70.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Amniota14 species14 genesCompare expression
Tetrapoda15 species15 genesCompare expression
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000003812.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000003812.

Cross-references

EnsemblENSSSCG00000003812
EMBLCU929719
Uniprot/SPTREMBLF1S814, F1S814_PIG

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