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S. scrofa Gene: - ENSSSCG00000004261 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000004261
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.45e3
  • 1.45e3
93.86
  • 93.86
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.25e4
  • 1.25e4
  • 1.35e4
  • 1.79e4
  • 1.89e4
46.91
  • 46.91
  • 42.98
  • 24.02
  • 19.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.41e4
  • 1.41e4
40.42
  • 40.42
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.49e4
  • 1.49e4
  • 1.54e4
36.89
  • 36.89
  • 34.66
AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
36.48
  • 36.48
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.53e4
  • 1.53e4
35.04
  • 35.04
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.54e4
  • 1.54e4
34.64
  • 34.64
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.56e4
  • 1.56e4
  • 1.76e4
  • 1.78e4
  • 2.05e4
33.86
  • 33.86
  • 25.36
  • 24.58
  • 13.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.57e4
  • 1.57e4
33.62
  • 33.62
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.57e4
  • 1.57e4
33.45
  • 33.45
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.62e4
  • 1.62e4
  • 1.69e4
31.17
  • 31.17
  • 28.32
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
29.42
  • 29.42
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
25.98
  • 25.98
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.75e4
  • 1.75e4
25.67
  • 25.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
1.77e4
  • 1.77e4
25.08
  • 25.08
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.82e4
  • 1.82e4
  • 1.91e4
  • 2.16e4
23.06
  • 23.06
  • 18.89
  • 8.32
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.88e4
  • 1.88e4
20.44
  • 20.44
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.93e4
  • 1.93e4
18.29
  • 18.29
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.93e4
  • 1.93e4
  • 2.06e4
  • 2.06e4
18.17
  • 18.17
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.00e4
  • 2.00e4
15.11
  • 15.11
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
2.05e4
  • 2.05e4
12.97
  • 12.97
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
2.08e4
  • 2.08e4
11.86
  • 11.86
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria3 species6 genesCompare expression
Amniota5 species8 genesCompare expression
Tetrapoda6 species9 genesCompare expression
Euteleostomi7 species10 genesCompare expression
Bilateria14 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000004261.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000004261
EMBLCU407116
Uniprot/SPTREMBLF1RTU6, F1RTU6_PIG

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