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S. scrofa Gene: COL9A1 - ENSSSCG00000004274 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000004274
NameCOL9A1
Descriptioncollagen, type IX, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2217]
OrganismSus scrofa (pig)
Orthologs(s)3 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.32e3
  • 2.32e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.86e3
  • 2.86e3
87.88
  • 87.88
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
  • 1.41e4
54.86
  • 54.86
  • 40.22
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.14e4
  • 1.14e4
51.72
  • 51.72
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
  • 1.28e4
  • 1.33e4
  • 1.43e4
51.54
  • 51.54
  • 45.69
  • 43.78
  • 39.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
1.24e4
  • 1.24e4
47.51
  • 47.51
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
46.57
  • 46.57
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.29e4
  • 1.29e4
45.25
  • 45.25
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.36
  • 44.36
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.39e4
  • 1.39e4
41.06
  • 41.06
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.46e4
  • 1.46e4
38.17
  • 38.17
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
36.53
  • 36.53
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.02
  • 36.02
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
34.12
  • 34.12
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
1.61e4
  • 1.61e4
31.56
  • 31.56
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
30.79
  • 30.79
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.64e4
  • 1.64e4
  • 1.88e4
  • 1.90e4
30.64
  • 30.64
  • 20.33
  • 19.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.67e4
  • 1.67e4
  • 1.85e4
29.38
  • 29.38
  • 21.66
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
24.13
  • 24.13
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.86e4
  • 1.86e4
21.02
  • 21.02
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSSSCG00000004274.

Cross-references

EnsemblENSSSCG00000004274 (COL9A1)
HGNCHGNC:2217 (COL9A1)
EMBLFP016097
Uniprot/SPTREMBLF1RTT3, F1RTT3_PIG

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