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S. scrofa Gene: SMIM8 - ENSSSCG00000004300 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000004300
NameSMIM8
Descriptionsmall integral membrane protein 8 [Source:HGNC Symbol;Acc:HGNC:21401]
OrganismSus scrofa (pig)
Synonym(s)c1h6orf162, c6orf162, dj102h19.2, dkfzp586e1923
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.40e3
  • 1.40e3
94.08
  • 94.08
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
1.60e3
  • 1.60e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
1.85e3
  • 1.85e3
  • 1.88e3
  • 2.54e3
  • 3.54e3
  • 5.35e3
92.18
  • 92.18
  • 92.04
  • 89.22
  • 85.00
  • 77.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.90e3
  • 1.90e3
91.96
  • 91.96
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
2.41e3
  • 2.41e3
89.80
  • 89.80
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.97e3
  • 2.97e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.18e3
  • 3.18e3
86.51
  • 86.51
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.65e3
  • 3.65e3
84.55
  • 84.55
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.72e3
  • 3.72e3
  • 5.73e3
84.24
  • 84.24
  • 75.72
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
4.60e3
  • 4.60e3
  • 5.19e3
  • 5.45e3
80.50
  • 80.50
  • 77.99
  • 76.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
4.68e3
  • 4.68e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
4.71e3
  • 4.71e3
80.06
  • 80.06
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
5.76e3
  • 5.76e3
75.61
  • 75.61
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
6.10e3
  • 6.10e3
74.13
  • 74.13
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.23e3
  • 6.23e3
  • 9.43e3
73.61
  • 73.61
  • 60.04
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
6.42e3
  • 6.42e3
72.79
  • 72.79
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
6.56e3
  • 6.56e3
72.19
  • 72.19
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
6.78e3
  • 6.78e3
71.26
  • 71.26
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
6.89e3
  • 6.89e3
70.81
  • 70.81
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
7.09e3
  • 7.09e3
  • 7.65e3
  • 1.10e4
69.95
  • 69.95
  • 67.59
  • 53.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.11e3
  • 7.11e3
  • 7.23e3
  • 7.73e3
69.86
  • 69.86
  • 69.34
  • 67.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
7.13e3
  • 7.13e3
69.77
  • 69.77
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
7.19e3
  • 7.19e3
69.53
  • 69.53
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
7.22e3
  • 7.22e3
  • 1.01e4
69.40
  • 69.40
  • 57.07
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
7.26e3
  • 7.26e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
7.65e3
  • 7.65e3
67.58
  • 67.58
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
7.90e3
  • 7.90e3
66.53
  • 66.53
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
8.12e3
  • 8.12e3
65.60
  • 65.60
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
8.14e3
  • 8.14e3
65.50
  • 65.50
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.20e3
  • 8.20e3
  • 1.07e4
  • 1.24e4
65.26
  • 65.26
  • 54.54
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.27e3
  • 8.27e3
64.94
  • 64.94
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
8.48e3
  • 8.48e3
64.04
  • 64.04
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.56e3
  • 8.56e3
  • 9.07e3
63.70
  • 63.70
  • 61.54
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.64e3
  • 8.64e3
63.38
  • 63.38
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.76e3
  • 8.76e3
  • 9.50e3
62.88
  • 62.88
  • 59.72
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
8.77e3
  • 8.77e3
62.81
  • 62.81
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
8.99e3
  • 8.99e3
61.89
  • 61.89
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.11e3
  • 9.11e3
  • 9.35e3
61.41
  • 61.41
  • 60.39
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.11e3
  • 9.11e3
61.40
  • 61.40
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.36e3
  • 9.36e3
60.34
  • 60.34
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.36e3
  • 9.36e3
60.34
  • 60.34
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
9.49e3
  • 9.49e3
59.76
  • 59.76
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
9.84e3
  • 9.84e3
58.30
  • 58.30
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.04e4
  • 1.04e4
55.88
  • 55.88
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
  • 1.10e4
  • 1.15e4
55.38
  • 55.38
  • 53.39
  • 51.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.05
  • 55.05
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.08e4
  • 1.08e4
  • 1.18e4
54.43
  • 54.43
  • 49.87
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.18e4
  • 1.19e4
52.72
  • 52.72
  • 52.51
  • 49.89
  • 49.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.12e4
  • 1.12e4
52.53
  • 52.53
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species17 genesCompare expression
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000004300.

Cross-references

EnsemblENSSSCG00000004300 (SMIM8)
HGNCHGNC:21401 (SMIM8)
EMBLCU695028
Uniprot/SPTREMBLF1S0G5, F1S0G5_PIG

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