S. scrofa Gene: - ENSSSCG00000004966 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000004966
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)20 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.33e4
47.51
  • 47.51
  • 43.48
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.26e4
  • 1.26e4
  • 1.42e4
  • 1.76e4
46.75
  • 46.75
  • 39.88
  • 25.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
  • 1.35e4
46.61
  • 46.61
  • 42.87
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.79
  • 44.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
38.46
  • 38.46
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.46e4
  • 1.46e4
38.10
  • 38.10
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.49e4
  • 1.49e4
  • 1.52e4
  • 1.61e4
  • 1.65e4
  • 1.70e4
37.05
  • 37.05
  • 35.71
  • 31.94
  • 30.14
  • 28.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.50e4
  • 1.50e4
  • 1.59e4
36.49
  • 36.49
  • 32.51
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
1.62e4
  • 1.62e4
31.31
  • 31.31
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
30.86
  • 30.86
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.94e4
  • 1.94e4
17.81
  • 17.81
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria9 species9 genesCompare expression
Mammalia10 species10 genesCompare expression
Amniota12 species12 genesCompare expression
Tetrapoda13 species13 genesCompare expression
Euteleostomi14 species14 genesCompare expression
Bilateria20 species20 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000004966.

Cross-references

EnsemblENSSSCG00000004966
EMBLCU062545
Uniprot/SPTREMBLF1SIU1, F1SIU1_PIG

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