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S. scrofa Gene: FANCM - ENSSSCG00000005000 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000005000
NameFANCM
DescriptionFanconi anemia complementation group M [Source:HGNC Symbol;Acc:HGNC:23168]
OrganismSus scrofa (pig)
Synonym(s)faap250, kiaa1596
Orthologs(s)14 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
7.78e3
  • 7.78e3
67.03
  • 67.03
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.67e3
  • 8.67e3
  • 1.14e4
63.27
  • 63.27
  • 51.75
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.89e3
  • 8.89e3
62.33
  • 62.33
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
9.46e3
  • 9.46e3
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.55e3
  • 9.55e3
59.52
  • 59.52
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.05e4
  • 1.05e4
55.63
  • 55.63
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.12e4
  • 1.12e4
52.54
  • 52.54
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.74
  • 50.74
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
49.09
  • 49.09
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.86
  • 48.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.21e4
  • 1.21e4
  • 1.47e4
48.83
  • 48.83
  • 37.51
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.21e4
  • 1.21e4
  • 1.48e4
48.71
  • 48.71
  • 37.22
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.67
  • 48.67
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.51
  • 48.51
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.60
  • 47.60
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.24e4
  • 1.24e4
  • 1.53e4
47.51
  • 47.51
  • 35.11
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.23
  • 47.23
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.25e4
  • 1.25e4
  • 1.30e4
  • 1.30e4
47.09
  • 47.09
  • 44.92
  • 44.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.25e4
  • 1.25e4
46.96
  • 46.96
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
46.92
  • 46.92
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.30
  • 46.30
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.94
  • 45.94
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
45.06
  • 45.06
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.86
  • 44.86
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.32e4
  • 1.32e4
  • 1.35e4
  • 1.42e4
  • 1.43e4
  • 1.56e4
44.03
  • 44.03
  • 42.57
  • 39.95
  • 39.47
  • 34.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.33e4
  • 1.33e4
  • 1.49e4
  • 1.59e4
  • 1.60e4
43.51
  • 43.51
  • 36.99
  • 32.41
  • 32.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.34
  • 43.34
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.36e4
  • 1.36e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
42.31
  • 42.31
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.37e4
  • 1.37e4
  • 1.45e4
  • 1.58e4
42.04
  • 42.04
  • 38.43
  • 32.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.39e4
  • 1.39e4
40.91
  • 40.91
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.40e4
  • 1.40e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.41e4
  • 1.41e4
40.10
  • 40.10
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.42e4
  • 1.42e4
  • 1.49e4
40.01
  • 40.01
  • 36.86
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
39.36
  • 39.36
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
38.41
  • 38.41
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
36.62
  • 36.62
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.50e4
  • 1.50e4
  • 1.61e4
36.46
  • 36.46
  • 31.63
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.51e4
  • 1.51e4
  • 1.54e4
36.01
  • 36.01
  • 34.78
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.52e4
  • 1.52e4
  • 1.64e4
35.42
  • 35.42
  • 30.45
AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
33.73
  • 33.73
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.60e4
  • 1.60e4
32.04
  • 32.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria10 species10 genesCompare expression
Mammalia11 species11 genesCompare expression
Amniota13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000005000.

Cross-references

EnsemblENSSSCG00000005000 (FANCM)
HGNCHGNC:23168 (FANCM)
EMBLCU570961
Uniprot/SPTREMBLF1SI11, F1SI11_PIG, I3LAY7, I3LAY7_PIG

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