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S. scrofa Gene: - ENSSSCG00000005613 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000005613
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)17 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
5.34e3
  • 5.34e3
77.39
  • 77.39
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.96e3
  • 5.96e3
  • 8.69e3
74.73
  • 74.73
  • 63.17
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.01e3
  • 6.01e3
  • 1.18e4
74.54
  • 74.54
  • 50.02
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
6.02e3
  • 6.02e3
74.47
  • 74.47
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
6.47e3
  • 6.47e3
72.56
  • 72.56
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
6.95e3
  • 6.95e3
  • 7.27e3
  • 8.54e3
  • 9.29e3
70.54
  • 70.54
  • 69.18
  • 63.80
  • 60.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
7.23e3
  • 7.23e3
  • 8.16e3
69.37
  • 69.37
  • 65.43
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
7.38e3
  • 7.38e3
  • 7.84e3
  • 8.84e3
68.73
  • 68.73
  • 66.75
  • 62.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.42e3
  • 7.42e3
  • 9.60e3
68.53
  • 68.53
  • 59.30
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
7.55e3
  • 7.55e3
68.01
  • 68.01
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
7.87e3
  • 7.87e3
  • 8.60e3
66.64
  • 66.64
  • 63.56
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
8.22e3
  • 8.22e3
65.15
  • 65.15
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.22e3
  • 8.22e3
  • 9.38e3
  • 1.24e4
65.14
  • 65.14
  • 60.23
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
8.60e3
  • 8.60e3
63.57
  • 63.57
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.66e3
  • 8.66e3
  • 8.99e3
  • 9.81e3
63.29
  • 63.29
  • 61.90
  • 58.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
8.67e3
  • 8.67e3
63.27
  • 63.27
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
8.78e3
  • 8.78e3
  • 1.00e4
62.77
  • 62.77
  • 57.53
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
8.82e3
  • 8.82e3
  • 9.62e3
  • 1.00e4
  • 1.13e4
  • 1.33e4
62.60
  • 62.60
  • 59.21
  • 57.41
  • 51.95
  • 43.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
8.87e3
  • 8.87e3
62.41
  • 62.41
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
8.98e3
  • 8.98e3
61.94
  • 61.94
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
9.07e3
  • 9.07e3
61.57
  • 61.57
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
9.10e3
  • 9.10e3
61.44
  • 61.44
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
9.11e3
  • 9.11e3
61.38
  • 61.38
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.26e3
  • 9.26e3
60.76
  • 60.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
9.63e3
  • 9.63e3
  • 1.06e4
  • 1.15e4
59.20
  • 59.20
  • 55.12
  • 51.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
9.89e3
  • 9.89e3
  • 1.07e4
  • 1.10e4
58.07
  • 58.07
  • 54.69
  • 53.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.60
  • 57.60
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.00e4
  • 1.00e4
57.50
  • 57.50
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.00e4
  • 1.00e4
57.44
  • 57.44
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
  • 1.16e4
57.28
  • 57.28
  • 50.76
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
56.37
  • 56.37
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.05e4
  • 1.05e4
55.29
  • 55.29
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.49
  • 53.49
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.16
  • 52.16
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.16e4
  • 1.16e4
50.73
  • 50.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.38
  • 50.38
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.26
  • 50.26
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
48.01
  • 48.01
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.40
  • 47.40
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
45.08
  • 45.08
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.52
  • 44.52
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.38
  • 44.38
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.33e4
  • 1.33e4
43.73
  • 43.73
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
43.32
  • 43.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Mammalia13 species13 genesCompare expression
Amniota15 species15 genesCompare expression
Tetrapoda16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000005613.

Cross-references

EnsemblENSSSCG00000005613
EMBLCU407118
Uniprot/SPTREMBLF1RS16, F1RS16_PIG

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