S. scrofa Gene: MED27 - ENSSSCG00000005720 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000005720
NameMED27
Descriptionmediator complex subunit 27 [Source:HGNC Symbol;Acc:HGNC:2377]
OrganismSus scrofa (pig)
Synonym(s)crsp34, crsp8, med3, trap37
Orthologs(s)23 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000023oocyte
  • UBERON:0034919juvenile stage
916
  • 916
96.12
  • 96.12
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
2.32e3
  • 2.32e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
2.37e3
  • 2.37e3
89.95
  • 89.95
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
2.55e3
  • 2.55e3
89.21
  • 89.21
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
3.31e3
  • 3.31e3
85.95
  • 85.95
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
3.46e3
  • 3.46e3
  • 3.81e3
  • 3.85e3
  • 6.32e3
85.35
  • 85.35
  • 83.86
  • 83.68
  • 73.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.55e3
  • 3.55e3
  • 9.60e3
84.97
  • 84.97
  • 59.29
AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
3.97e3
  • 3.97e3
  • 6.13e3
83.19
  • 83.19
  • 74.00
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.03e3
  • 4.03e3
  • 9.75e3
82.91
  • 82.91
  • 58.69
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
4.13e3
  • 4.13e3
  • 5.92e3
  • 6.17e3
  • 6.23e3
  • 7.52e3
82.51
  • 82.51
  • 74.89
  • 73.83
  • 73.60
  • 68.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
4.84e3
  • 4.84e3
  • 6.27e3
  • 9.37e3
79.49
  • 79.49
  • 73.42
  • 60.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
5.13e3
  • 5.13e3
78.26
  • 78.26
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
5.15e3
  • 5.15e3
78.16
  • 78.16
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
5.53e3
  • 5.53e3
76.56
  • 76.56
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
5.62e3
  • 5.62e3
  • 8.45e3
76.19
  • 76.19
  • 64.17
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
5.68e3
  • 5.68e3
  • 6.52e3
  • 6.58e3
75.94
  • 75.94
  • 72.36
  • 72.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.72e3
  • 5.72e3
75.77
  • 75.77
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
5.74e3
  • 5.74e3
  • 5.75e3
75.67
  • 75.67
  • 75.63
AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
6.10e3
  • 6.10e3
74.16
  • 74.16
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
6.18e3
  • 6.18e3
  • 9.81e3
  • 1.24e4
73.80
  • 73.80
  • 58.43
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
6.34e3
  • 6.34e3
  • 6.37e3
  • 8.45e3
73.14
  • 73.14
  • 72.99
  • 64.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
6.62e3
  • 6.62e3
71.95
  • 71.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.85e3
  • 6.85e3
  • 9.82e3
70.98
  • 70.98
  • 58.39
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
7.11e3
  • 7.11e3
69.85
  • 69.85
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
7.66e3
  • 7.66e3
67.55
  • 67.55
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.94e3
  • 7.94e3
  • 8.47e3
  • 8.53e3
66.35
  • 66.35
  • 64.11
  • 63.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
8.85e3
  • 8.85e3
62.48
  • 62.48
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.98e3
  • 8.98e3
61.96
  • 61.96
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.85e3
  • 9.85e3
  • 1.14e4
58.25
  • 58.25
  • 51.48
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
9.88e3
  • 9.88e3
58.12
  • 58.12
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
56.82
  • 56.82
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.94
  • 55.94
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.04e4
  • 1.04e4
55.72
  • 55.72
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.18
  • 55.18
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.76
  • 53.76
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.72
  • 53.72
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.63
  • 53.63
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.56
  • 53.56
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.10e4
  • 1.10e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.11e4
  • 1.11e4
53.07
  • 53.07
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
51.90
  • 51.90
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.83
  • 51.83
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.65
  • 51.65
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.66
  • 49.66
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.20e4
  • 1.20e4
48.92
  • 48.92
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.26e4
  • 1.26e4
46.76
  • 46.76
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.30
  • 46.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Mammalia14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species17 genesCompare expression
Bilateria23 species23 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000005720.

Cross-references

EnsemblENSSSCG00000005720 (MED27)
HGNCHGNC:2377 (MED27)
EMBLAY553926
Uniprot/SWISSPROTMED27_PIG, Q6Q7J5

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