S. scrofa Gene: PKHD1L1 - ENSSSCG00000006025 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006025
NamePKHD1L1
Descriptionpolycystic kidney and hepatic disease 1 (autosomal recessive)-like 1 [Source:HGNC Symbol;Acc:HGNC:20313]
OrganismSus scrofa (pig)
Orthologs(s)16 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.49e3
  • 1.49e3
  • 1.04e4
  • 1.12e4
93.67
  • 93.67
  • 55.72
  • 52.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.21e3
  • 2.21e3
90.64
  • 90.64
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.92e3
  • 7.92e3
  • 1.18e4
66.42
  • 66.42
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.41
  • 54.41
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.08e4
  • 1.08e4
54.07
  • 54.07
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.13e4
  • 1.13e4
52.01
  • 52.01
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
  • 1.30e4
  • 1.33e4
  • 1.54e4
44.98
  • 44.98
  • 44.88
  • 43.56
  • 34.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.34e4
  • 1.34e4
  • 1.54e4
  • 1.59e4
  • 1.62e4
43.05
  • 43.05
  • 34.59
  • 32.63
  • 31.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.36e4
  • 1.36e4
42.52
  • 42.52
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.38e4
  • 1.38e4
  • 1.54e4
41.53
  • 41.53
  • 34.78
AEIR
  • AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.39e4
  • 1.39e4
41.01
  • 41.01
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.43e4
  • 1.43e4
39.53
  • 39.53
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.64
  • 38.64
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.46e4
  • 1.46e4
  • 1.63e4
37.96
  • 37.96
  • 30.76
AEIR
  • AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.48e4
  • 1.48e4
37.30
  • 37.30
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.50e4
  • 1.50e4
36.39
  • 36.39
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.50e4
  • 1.50e4
  • 1.63e4
  • 1.69e4
36.33
  • 36.33
  • 30.88
  • 28.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
35.98
  • 35.98
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.54e4
  • 1.54e4
34.82
  • 34.82
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.54e4
  • 1.54e4
34.78
  • 34.78
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
1.55e4
  • 1.55e4
34.37
  • 34.37
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.56e4
  • 1.56e4
  • 1.66e4
33.97
  • 33.97
  • 29.76
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
33.81
  • 33.81
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
1.59e4
  • 1.59e4
32.47
  • 32.47
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.59e4
  • 1.59e4
32.40
  • 32.40
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.60e4
  • 1.60e4
32.20
  • 32.20
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.65e4
  • 1.65e4
29.94
  • 29.94
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.67e4
  • 1.67e4
29.29
  • 29.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Laurasiatheria4 species4 genesCompare expression
Boreoeutheria12 species12 genesCompare expression
Theria13 species13 genesCompare expression
Tetrapoda14 species14 genesCompare expression
Euteleostomi15 species16 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006025.

Cross-references

EnsemblENSSSCG00000006025 (PKHD1L1)
HGNCHGNC:20313 (PKHD1L1)
EMBLAEMK01191063, CU468453, CU595633, CU695163
Uniprot/SPTREMBLF1S1H9, F1S1H9_PIG

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