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S. scrofa Gene: RMDN1 - ENSSSCG00000006136 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006136
NameRMDN1
Descriptionregulator of microtubule dynamics 1 [Source:HGNC Symbol;Acc:HGNC:24285]
OrganismSus scrofa (pig)
Synonym(s)cgi-90, fam82b, flj20665, rmd1
Orthologs(s)21 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
792
  • 792
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
1.11e3
  • 1.11e3
95.28
  • 95.28
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.56e3
  • 1.56e3
  • 2.14e3
  • 2.24e3
93.40
  • 93.40
  • 90.95
  • 90.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.61e3
  • 1.61e3
93.18
  • 93.18
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.62e3
  • 1.62e3
93.12
  • 93.12
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.76e3
  • 1.76e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.76e3
  • 1.76e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0000113post-juvenile adult stage
1.78e3
  • 1.78e3
  • 4.27e3
  • 9.11e3
92.47
  • 92.47
  • 81.90
  • 61.37
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.93e3
  • 1.93e3
91.83
  • 91.83
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
2.01e3
  • 2.01e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.10e3
  • 2.10e3
91.09
  • 91.09
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
2.12e3
  • 2.12e3
91.02
  • 91.02
AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
2.14e3
  • 2.14e3
90.95
  • 90.95
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
2.15e3
  • 2.15e3
90.88
  • 90.88
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
2.26e3
  • 2.26e3
  • 2.87e3
  • 3.02e3
  • 3.18e3
  • 5.05e3
90.44
  • 90.44
  • 87.85
  • 87.20
  • 86.54
  • 78.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
90.36
  • 90.36
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.28e3
  • 2.28e3
  • 6.94e3
90.32
  • 90.32
  • 70.57
AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.30e3
  • 2.30e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
90.14
  • 90.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
2.41e3
  • 2.41e3
  • 4.10e3
89.77
  • 89.77
  • 82.62
AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
2.47e3
  • 2.47e3
89.55
  • 89.55
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.48e3
  • 2.48e3
89.51
  • 89.51
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.48e3
  • 2.48e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
2.56e3
  • 2.56e3
  • 3.47e3
  • 3.54e3
89.16
  • 89.16
  • 85.28
  • 84.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
2.63e3
  • 2.63e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
2.83e3
  • 2.83e3
88.02
  • 88.02
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
2.94e3
  • 2.94e3
87.54
  • 87.54
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.03e3
  • 3.03e3
  • 6.50e3
87.16
  • 87.16
  • 72.47
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
3.07e3
  • 3.07e3
86.98
  • 86.98
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
3.12e3
  • 3.12e3
86.76
  • 86.76
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
3.13e3
  • 3.13e3
86.73
  • 86.73
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
3.34e3
  • 3.34e3
85.84
  • 85.84
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
3.60e3
  • 3.60e3
  • 5.48e3
84.74
  • 84.74
  • 76.77
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
3.62e3
  • 3.62e3
84.68
  • 84.68
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
3.65e3
  • 3.65e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
3.91e3
  • 3.91e3
83.42
  • 83.42
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
3.98e3
  • 3.98e3
  • 5.43e3
83.13
  • 83.13
  • 76.98
AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
4.33e3
  • 4.33e3
81.67
  • 81.67
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
4.34e3
  • 4.34e3
  • 5.62e3
  • 5.93e3
81.60
  • 81.60
  • 76.19
  • 74.88
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
4.44e3
  • 4.44e3
81.20
  • 81.20
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
4.46e3
  • 4.46e3
81.11
  • 81.11
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
5.36e3
  • 5.36e3
  • 7.77e3
  • 8.11e3
  • 8.28e3
77.30
  • 77.30
  • 67.07
  • 65.61
  • 64.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
5.44e3
  • 5.44e3
  • 5.91e3
  • 1.24e4
76.93
  • 76.93
  • 74.97
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
5.56e3
  • 5.56e3
76.42
  • 76.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.49e3
  • 7.49e3
  • 8.28e3
68.24
  • 68.24
  • 64.91
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.73e3
  • 7.73e3
  • 8.14e3
  • 1.02e4
67.22
  • 67.22
  • 65.49
  • 56.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
7.88e3
  • 7.88e3
66.60
  • 66.60
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
8.10e3
  • 8.10e3
65.67
  • 65.67
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species2 genesCompare expression
Laurasiatheria4 species5 genesCompare expression
Boreoeutheria12 species14 genesCompare expression
Theria13 species15 genesCompare expression
Mammalia14 species16 genesCompare expression
Amniota16 species18 genesCompare expression
Tetrapoda17 species19 genesCompare expression
Euteleostomi18 species20 genesCompare expression
Bilateria19 species21 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006136.

Cross-references

EnsemblENSSSCG00000006136 (RMDN1)
HGNCHGNC:24285 (RMDN1)
EMBLCU462951
Uniprot/SPTREMBLF1RXD4, F1RXD4_PIG

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