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S. scrofa Gene: SBSPON - ENSSSCG00000006183 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006183
NameSBSPON
Descriptionsomatomedin B and thrombospondin type 1 domain containing [Source:HGNC Symbol;Acc:HGNC:30362]
OrganismSus scrofa (pig)
Synonym(s)c8orf84, rpesp
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
950
  • 950
  • 1.51e3
  • 2.02e3
95.98
  • 95.98
  • 93.62
  • 91.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
3.43e3
  • 3.43e3
85.46
  • 85.46
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
6.25e3
  • 6.25e3
  • 1.04e4
  • 1.36e4
73.50
  • 73.50
  • 56.12
  • 42.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
6.51e3
  • 6.51e3
  • 1.03e4
72.40
  • 72.40
  • 56.26
AEIR
  • AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
6.62e3
  • 6.62e3
71.93
  • 71.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
7.15e3
  • 7.15e3
  • 7.84e3
  • 1.16e4
69.69
  • 69.69
  • 66.76
  • 50.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
7.23e3
  • 7.23e3
69.37
  • 69.37
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
7.65e3
  • 7.65e3
  • 8.23e3
67.59
  • 67.59
  • 65.12
AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
7.86e3
  • 7.86e3
66.70
  • 66.70
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
7.92e3
  • 7.92e3
  • 1.24e4
  • 1.24e4
66.42
  • 66.42
  • 47.51
  • 47.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.29e3
  • 8.29e3
64.84
  • 64.84
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
8.32e3
  • 8.32e3
64.75
  • 64.75
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.83e3
  • 8.83e3
  • 1.05e4
62.58
  • 62.58
  • 55.45
AEIR
  • AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
9.09e3
  • 9.09e3
61.45
  • 61.45
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
9.39e3
  • 9.39e3
60.19
  • 60.19
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
9.64e3
  • 9.64e3
59.15
  • 59.15
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
9.83e3
  • 9.83e3
58.35
  • 58.35
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.07e4
  • 1.07e4
  • 1.27e4
  • 1.32e4
  • 1.35e4
  • 1.62e4
54.59
  • 54.59
  • 46.09
  • 44.10
  • 42.62
  • 31.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.14e4
  • 1.14e4
51.65
  • 51.65
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.46
  • 51.46
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.16e4
  • 1.16e4
  • 1.44e4
50.68
  • 50.68
  • 39.14
AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.17e4
  • 1.17e4
50.55
  • 50.55
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.53
  • 49.53
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.19e4
  • 1.19e4
49.36
  • 49.36
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.20e4
  • 1.20e4
  • 1.36e4
49.04
  • 49.04
  • 42.46
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.21e4
  • 1.21e4
48.86
  • 48.86
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
  • 1.27e4
  • 1.40e4
46.86
  • 46.86
  • 46.16
  • 40.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.27e4
  • 1.27e4
46.01
  • 46.01
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.00
  • 46.00
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.28e4
  • 1.28e4
45.85
  • 45.85
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.29e4
  • 1.29e4
45.42
  • 45.42
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.74
  • 44.74
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.30e4
  • 1.30e4
44.72
  • 44.72
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.31e4
  • 1.31e4
  • 1.39e4
44.27
  • 44.27
  • 40.92
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.32e4
  • 1.32e4
44.22
  • 44.22
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.32e4
  • 1.32e4
43.96
  • 43.96
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.33e4
  • 1.33e4
43.75
  • 43.75
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.35e4
  • 1.35e4
42.69
  • 42.69
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
1.36e4
  • 1.36e4
  • 1.53e4
  • 1.54e4
  • 1.63e4
42.28
  • 42.28
  • 35.14
  • 34.56
  • 30.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.37e4
  • 1.37e4
41.84
  • 41.84
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.67
  • 40.67
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.40e4
  • 1.40e4
40.48
  • 40.48
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.84
  • 39.84
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
39.06
  • 39.06
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.44e4
  • 1.44e4
38.83
  • 38.83
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006183.

Cross-references

EnsemblENSSSCG00000006183 (SBSPON)
HGNCHGNC:30362 (SBSPON)
EMBLCU469056
Uniprot/SPTREMBLF1RWI4, F1RWI4_PIG

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