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S. scrofa Gene: - ENSSSCG00000006261 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006261
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
737
  • 737
96.88
  • 96.88
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
936
  • 936
96.04
  • 96.04
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.09e3
  • 1.09e3
95.40
  • 95.40
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.10e3
  • 1.10e3
95.32
  • 95.32
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.13e3
  • 1.13e3
95.22
  • 95.22
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
1.23e3
  • 1.23e3
  • 1.30e3
  • 1.69e3
94.78
  • 94.78
  • 94.50
  • 92.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.27e3
  • 1.27e3
94.61
  • 94.61
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
1.32e3
  • 1.32e3
  • 2.35e3
  • 2.72e3
94.40
  • 94.40
  • 90.05
  • 88.46
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.52e3
  • 1.52e3
93.56
  • 93.56
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.55e3
  • 1.55e3
93.42
  • 93.42
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
1.60e3
  • 1.60e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.63e3
  • 1.63e3
  • 2.84e3
93.11
  • 93.11
  • 87.97
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.66e3
  • 1.66e3
  • 1.89e3
  • 2.66e3
92.96
  • 92.96
  • 92.00
  • 88.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.73e3
  • 1.73e3
  • 2.31e3
92.69
  • 92.69
  • 90.22
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
1.75e3
  • 1.75e3
  • 2.20e3
  • 1.24e4
92.57
  • 92.57
  • 90.67
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.81e3
  • 1.81e3
92.35
  • 92.35
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.81e3
  • 1.81e3
92.33
  • 92.33
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.82e3
  • 1.82e3
92.30
  • 92.30
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
1.88e3
  • 1.88e3
92.06
  • 92.06
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.92e3
  • 1.92e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.95e3
  • 1.95e3
91.74
  • 91.74
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.95e3
  • 1.95e3
91.72
  • 91.72
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
2.03e3
  • 2.03e3
91.38
  • 91.38
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.05e3
  • 2.05e3
91.30
  • 91.30
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
2.06e3
  • 2.06e3
91.29
  • 91.29
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
2.08e3
  • 2.08e3
91.20
  • 91.20
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
2.11e3
  • 2.11e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
2.11e3
  • 2.11e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.16e3
  • 2.16e3
  • 2.33e3
  • 2.57e3
90.86
  • 90.86
  • 90.11
  • 89.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
2.18e3
  • 2.18e3
90.74
  • 90.74
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
2.20e3
  • 2.20e3
90.68
  • 90.68
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
2.31e3
  • 2.31e3
90.21
  • 90.21
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
2.33e3
  • 2.33e3
90.14
  • 90.14
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.33e3
  • 2.33e3
  • 2.39e3
90.12
  • 90.12
  • 89.89
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
2.34e3
  • 2.34e3
  • 2.98e3
90.08
  • 90.08
  • 87.38
AEIR
  • AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
2.35e3
  • 2.35e3
  • 2.50e3
  • 2.68e3
  • 2.94e3
90.03
  • 90.03
  • 89.41
  • 88.63
  • 87.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.41e3
  • 2.41e3
  • 2.46e3
89.78
  • 89.78
  • 89.56
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
2.48e3
  • 2.48e3
  • 3.26e3
  • 3.94e3
  • 4.31e3
  • 4.76e3
89.51
  • 89.51
  • 86.20
  • 83.30
  • 81.74
  • 79.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
2.48e3
  • 2.48e3
89.51
  • 89.51
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.49e3
  • 2.49e3
89.47
  • 89.47
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.53e3
  • 2.53e3
  • 3.35e3
  • 4.40e3
89.29
  • 89.29
  • 85.82
  • 81.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.59e3
  • 2.59e3
  • 3.58e3
89.01
  • 89.01
  • 84.83
AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
3.03e3
  • 3.03e3
87.18
  • 87.18
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
3.18e3
  • 3.18e3
86.55
  • 86.55
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
3.87e3
  • 3.87e3
83.59
  • 83.59
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
4.15e3
  • 4.15e3
82.41
  • 82.41
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
4.24e3
  • 4.24e3
82.03
  • 82.03
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
4.25e3
  • 4.25e3
82.01
  • 82.01
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
4.99e3
  • 4.99e3
78.85
  • 78.85
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria4 species4 genesCompare expression
Theria5 species8 genesCompare expression
Mammalia6 species9 genesCompare expression
Amniota8 species11 genesCompare expression
Tetrapoda9 species12 genesCompare expression
Euteleostomi10 species13 genesCompare expression
Bilateria16 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006261.

Cross-references

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