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S. scrofa Gene: PCMTD1 - ENSSSCG00000006267 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006267
NamePCMTD1
Descriptionprotein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:30483]
OrganismSus scrofa (pig)
Synonym(s)flj10883
Orthologs(s)19 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
544
  • 544
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
566
  • 566
  • 573
  • 957
  • 984
  • 5.43e3
97.61
  • 97.61
  • 97.57
  • 95.95
  • 95.83
  • 77.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
572
  • 572
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
619
  • 619
  • 2.39e3
  • 1.24e4
97.38
  • 97.38
  • 89.88
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
646
  • 646
97.27
  • 97.27
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
682
  • 682
97.11
  • 97.11
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
788
  • 788
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
805
  • 805
  • 1.58e3
96.59
  • 96.59
  • 93.32
AEIR
  • AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
829
  • 829
96.49
  • 96.49
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
870
  • 870
  • 1.58e3
  • 1.73e3
96.32
  • 96.32
  • 93.32
  • 92.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
956
  • 956
95.95
  • 95.95
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.04e3
  • 1.04e3
  • 1.26e3
  • 2.17e3
95.60
  • 95.60
  • 94.65
  • 90.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.06e3
  • 1.06e3
  • 2.21e3
  • 2.57e3
95.49
  • 95.49
  • 90.63
  • 89.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.09e3
  • 1.09e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.12e3
  • 1.12e3
95.26
  • 95.26
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.15e3
  • 1.15e3
95.14
  • 95.14
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
1.20e3
  • 1.20e3
  • 2.32e3
94.93
  • 94.93
  • 90.17
AEIR
  • AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.24e3
  • 1.24e3
  • 1.25e3
  • 1.62e3
94.74
  • 94.74
  • 94.71
  • 93.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.35e3
  • 1.35e3
94.27
  • 94.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.41e3
  • 1.41e3
  • 3.50e3
94.02
  • 94.02
  • 85.18
AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0018685nursing stage
  • UBERON:0000104life cycle
1.47e3
  • 1.47e3
  • 2.42e3
93.78
  • 93.78
  • 89.74
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.66e3
  • 1.66e3
92.98
  • 92.98
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.66e3
  • 1.66e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.73e3
  • 1.73e3
92.69
  • 92.69
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.76e3
  • 1.76e3
92.56
  • 92.56
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.86e3
  • 1.86e3
92.13
  • 92.13
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.88e3
  • 1.88e3
  • 2.43e3
  • 2.77e3
92.04
  • 92.04
  • 89.71
  • 88.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.90e3
  • 1.90e3
91.93
  • 91.93
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.91e3
  • 1.91e3
91.90
  • 91.90
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.92e3
  • 1.92e3
91.86
  • 91.86
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.94e3
  • 1.94e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.95e3
  • 1.95e3
91.75
  • 91.75
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.99e3
  • 1.99e3
91.57
  • 91.57
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.10e3
  • 2.10e3
  • 4.55e3
91.12
  • 91.12
  • 80.71
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
2.10e3
  • 2.10e3
  • 2.48e3
91.10
  • 91.10
  • 89.51
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
2.11e3
  • 2.11e3
91.07
  • 91.07
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0034919juvenile stage
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
2.26e3
  • 2.26e3
  • 3.37e3
  • 3.68e3
  • 4.11e3
90.44
  • 90.44
  • 85.73
  • 84.41
  • 82.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
2.28e3
  • 2.28e3
90.32
  • 90.32
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
2.36e3
  • 2.36e3
90.00
  • 90.00
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
2.45e3
  • 2.45e3
89.62
  • 89.62
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
2.46e3
  • 2.46e3
89.59
  • 89.59
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
2.57e3
  • 2.57e3
89.11
  • 89.11
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
2.94e3
  • 2.94e3
87.54
  • 87.54
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
3.64e3
  • 3.64e3
84.58
  • 84.58
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
3.67e3
  • 3.67e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
6.23e3
  • 6.23e3
73.61
  • 73.61
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
6.51e3
  • 6.51e3
72.43
  • 72.43
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
8.74e3
  • 8.74e3
62.96
  • 62.96
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006267.

Cross-references

EnsemblENSSSCG00000006267 (PCMTD1)
HGNCHGNC:30483 (PCMTD1)
EMBLCU302276, CU469101
Uniprot/SPTREMBLF1RSF3, F1RSF3_PIG

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