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S. scrofa Gene: RRNAD1 - ENSSSCG00000006470 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006470
NameRRNAD1
Descriptionribosomal RNA adenine dimethylase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24273]
OrganismSus scrofa (pig)
Synonym(s)c1orf66, cgi-41
Orthologs(s)27 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000178blood
  • UBERON:0018685nursing stage
5.59e3
  • 5.59e3
76.31
  • 76.31
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
6.22e3
  • 6.22e3
  • 1.04e4
73.63
  • 73.63
  • 55.97
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
6.89e3
  • 6.89e3
70.78
  • 70.78
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000104life cycle
7.04e3
  • 7.04e3
70.18
  • 70.18
AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
8.21e3
  • 8.21e3
65.21
  • 65.21
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
8.45e3
  • 8.45e3
  • 1.21e4
  • 1.24e4
64.17
  • 64.17
  • 48.51
  • 47.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
8.66e3
  • 8.66e3
  • 1.08e4
63.28
  • 63.28
  • 54.20
AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
8.68e3
  • 8.68e3
63.23
  • 63.23
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.70e3
  • 8.70e3
  • 1.03e4
  • 1.11e4
63.13
  • 63.13
  • 56.50
  • 52.81
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
8.78e3
  • 8.78e3
62.77
  • 62.77
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
8.83e3
  • 8.83e3
  • 9.33e3
  • 9.36e3
  • 9.46e3
  • 1.12e4
62.58
  • 62.58
  • 60.47
  • 60.34
  • 59.91
  • 52.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
8.90e3
  • 8.90e3
  • 9.36e3
  • 1.12e4
62.27
  • 62.27
  • 60.33
  • 52.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
8.91e3
  • 8.91e3
62.24
  • 62.24
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
9.03e3
  • 9.03e3
61.75
  • 61.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
9.51e3
  • 9.51e3
  • 9.69e3
  • 1.04e4
59.70
  • 59.70
  • 58.92
  • 55.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
9.61e3
  • 9.61e3
59.26
  • 59.26
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
9.65e3
  • 9.65e3
  • 1.05e4
59.11
  • 59.11
  • 55.67
AEIR
  • AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
9.92e3
  • 9.92e3
57.94
  • 57.94
AEIR
  • AEIR
UBERON:0001383muscle of leg
  • UBERON:0018685nursing stage
9.93e3
  • 9.93e3
57.93
  • 57.93
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.01e4
  • 1.01e4
57.28
  • 57.28
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
  • 1.16e4
  • 1.26e4
56.34
  • 56.34
  • 50.81
  • 46.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
55.59
  • 55.59
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.05e4
  • 1.05e4
55.31
  • 55.31
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
1.06e4
  • 1.06e4
55.05
  • 55.05
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.15e4
  • 1.20e4
54.78
  • 54.78
  • 52.40
  • 51.16
  • 49.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.67
  • 54.67
AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.07e4
  • 1.07e4
54.47
  • 54.47
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000068embryo stage
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
  • 1.33e4
53.74
  • 53.74
  • 43.80
AEIR
  • AEIR
  • AEIR
UBERON:0001155colon
  • UBERON:0034919juvenile stage
1.15e4
  • 1.15e4
51.12
  • 51.12
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.17e4
  • 1.17e4
50.22
  • 50.22
AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
50.08
  • 50.08
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
1.18e4
  • 1.18e4
49.91
  • 49.91
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
1.19e4
  • 1.19e4
49.44
  • 49.44
AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.99
  • 47.99
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.89
  • 47.89
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.56
  • 47.56
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.24e4
  • 1.24e4
47.50
  • 47.50
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
1.25e4
  • 1.25e4
47.00
  • 47.00
AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.27e4
  • 1.27e4
46.20
  • 46.20
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
1.29e4
  • 1.29e4
45.32
  • 45.32
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.34e4
  • 1.34e4
43.21
  • 43.21
AEIR
  • AEIR
UBERON:0002298brainstem
  • UBERON:0034919juvenile stage
1.35e4
  • 1.35e4
42.64
  • 42.64
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.70
  • 41.70
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
1.38e4
  • 1.38e4
41.43
  • 41.43
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
1.40e4
  • 1.40e4
40.86
  • 40.86
AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
1.42e4
  • 1.42e4
39.62
  • 39.62
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
1.45e4
  • 1.45e4
38.56
  • 38.56
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
1.51e4
  • 1.51e4
36.15
  • 36.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Tetrapoda17 species18 genesCompare expression
Euteleostomi18 species19 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006470.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000006470.

Cross-references

EnsemblENSSSCG00000006470 (RRNAD1)
HGNCHGNC:24273 (RRNAD1)
EMBLCU582900
Uniprot/SPTREMBLF1RHJ0, F1RHJ0_PIG

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