S. scrofa Gene: - ENSSSCG00000006506 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006506
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)18 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001870frontal cortex
  • UBERON:0000112sexually immature stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
342
  • 342
  • 400
  • 550
  • 621
98.56
  • 98.56
  • 98.31
  • 97.67
  • 97.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
374
  • 374
98.42
  • 98.42
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
378
  • 378
98.40
  • 98.40
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
408
  • 408
  • 757
98.27
  • 98.27
  • 96.80
AEIR
  • AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
420
  • 420
98.22
  • 98.22
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
481
  • 481
97.96
  • 97.96
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
487
  • 487
97.94
  • 97.94
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
505
  • 505
97.86
  • 97.86
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
543
  • 543
97.70
  • 97.70
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
607
  • 607
97.43
  • 97.43
AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
609
  • 609
  • 681
97.42
  • 97.42
  • 97.12
AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
635
  • 635
97.31
  • 97.31
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
5.46e3
  • 5.46e3
76.87
  • 76.87
AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
9.27e3
  • 9.27e3
60.71
  • 60.71
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
9.42e3
  • 9.42e3
  • 1.11e4
60.07
  • 60.07
  • 52.77
AEIR
  • AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
9.72e3
  • 9.72e3
58.79
  • 58.79
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
9.94e3
  • 9.94e3
57.86
  • 57.86
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
1.06e4
  • 1.06e4
  • 1.18e4
  • 1.19e4
54.96
  • 54.96
  • 50.04
  • 49.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.07e4
  • 1.07e4
  • 1.24e4
54.44
  • 54.44
  • 47.43
AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
1.09e4
  • 1.09e4
53.72
  • 53.72
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
1.10e4
  • 1.10e4
  • 1.15e4
53.41
  • 53.41
  • 51.29
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
1.13e4
  • 1.13e4
52.24
  • 52.24
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.17e4
  • 1.17e4
  • 1.39e4
50.21
  • 50.21
  • 41.20
AEIR
  • AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
1.22e4
  • 1.22e4
  • 1.24e4
48.29
  • 48.29
  • 47.51
AEIR
  • AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
48.02
  • 48.02
AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
1.23e4
  • 1.23e4
47.67
  • 47.67
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.25e4
  • 1.25e4
47.09
  • 47.09
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
1.31e4
  • 1.31e4
44.39
  • 44.39
AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
  • UBERON:0034919juvenile stage
1.34e4
  • 1.34e4
  • 1.39e4
  • 1.41e4
  • 1.42e4
  • 1.44e4
43.24
  • 43.24
  • 41.09
  • 40.17
  • 39.94
  • 38.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
1.35e4
  • 1.35e4
42.85
  • 42.85
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
1.43e4
  • 1.43e4
  • 1.54e4
39.25
  • 39.25
  • 34.88
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
1.44e4
  • 1.44e4
38.84
  • 38.84
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
1.45e4
  • 1.45e4
  • 1.49e4
38.72
  • 38.72
  • 36.64
AEIR
  • AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
1.53e4
  • 1.53e4
35.07
  • 35.07
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.56e4
  • 1.56e4
33.85
  • 33.85
AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0018241prime adult stage
1.65e4
  • 1.65e4
30.13
  • 30.13
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.66e4
  • 1.66e4
  • 2.06e4
  • 2.06e4
29.53
  • 29.53
  • 12.74
  • 12.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.89e4
  • 1.89e4
19.84
  • 19.84
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Amniota16 species16 genesCompare expression
Euteleostomi17 species18 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006506.

Cross-references

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