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S. scrofa Gene: - ENSSSCG00000006757 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006757
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)25 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
3.49e3
  • 3.49e3
  • 6.93e3
85.23
  • 85.23
  • 70.62
AEIR
  • AEIR
  • AEIR
UBERON:0000082adult mammalian kidney
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
5.05e3
  • 5.05e3
  • 1.21e4
78.62
  • 78.62
  • 48.85
AEIR
  • AEIR
  • AEIR
CL:0000023oocyte
  • UBERON:0034919juvenile stage
5.40e3
  • 5.40e3
77.13
  • 77.13
AEIR
  • AEIR
UBERON:0001013adipose tissue
  • UBERON:0034919juvenile stage
  • UBERON:0018685nursing stage
  • UBERON:0018241prime adult stage
6.05e3
  • 6.05e3
  • 1.24e4
  • 1.36e4
74.34
  • 74.34
  • 47.51
  • 42.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018685nursing stage
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
7.34e3
  • 7.34e3
  • 8.28e3
  • 9.51e3
  • 1.03e4
  • 1.19e4
68.87
  • 68.87
  • 64.91
  • 59.71
  • 56.49
  • 49.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001301epididymis
  • UBERON:0034919juvenile stage
7.40e3
  • 7.40e3
68.64
  • 68.64
AEIR
  • AEIR
UBERON:0000995uterus
  • UBERON:0034919juvenile stage
  • UBERON:0000113post-juvenile adult stage
  • UBERON:0018685nursing stage
7.45e3
  • 7.45e3
  • 1.14e4
  • 1.18e4
68.41
  • 68.41
  • 51.63
  • 50.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002372tonsil
  • UBERON:0034919juvenile stage
7.46e3
  • 7.46e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0034919juvenile stage
  • UBERON:0000068embryo stage
7.60e3
  • 7.60e3
  • 7.89e3
67.78
  • 67.78
  • 66.56
AEIR
  • AEIR
  • AEIR
UBERON:0002509mesenteric lymph node
  • UBERON:0034919juvenile stage
7.62e3
  • 7.62e3
67.68
  • 67.68
AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.76e3
  • 7.76e3
  • 1.14e4
67.11
  • 67.11
  • 51.83
AEIR
  • AEIR
  • AEIR
UBERON:0016540occipital cortex
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
7.96e3
  • 7.96e3
  • 1.34e4
66.24
  • 66.24
  • 43.21
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
8.10e3
  • 8.10e3
  • 9.31e3
  • 1.08e4
65.68
  • 65.68
  • 60.52
  • 54.12
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002421hippocampal formation
  • UBERON:0034919juvenile stage
8.12e3
  • 8.12e3
65.57
  • 65.57
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • UBERON:0034919juvenile stage
8.14e3
  • 8.14e3
65.48
  • 65.48
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0034919juvenile stage
  • UBERON:0018241prime adult stage
  • UBERON:0018685nursing stage
8.18e3
  • 8.18e3
  • 9.90e3
  • 9.96e3
65.33
  • 65.33
  • 58.05
  • 57.79
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000501granulosa cell
  • UBERON:0034919juvenile stage
8.39e3
  • 8.39e3
64.45
  • 64.45
AEIR
  • AEIR
UBERON:0002336corpus callosum
  • UBERON:0034919juvenile stage
8.46e3
  • 8.46e3
64.14
  • 64.14
AEIR
  • AEIR
UBERON:0000945stomach
  • UBERON:0034919juvenile stage
8.53e3
  • 8.53e3
63.86
  • 63.86
AEIR
  • AEIR
UBERON:0001896medulla oblongata
  • UBERON:0034919juvenile stage
8.53e3
  • 8.53e3
63.85
  • 63.85
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0034919juvenile stage
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
8.63e3
  • 8.63e3
  • 9.89e3
  • 1.08e4
63.43
  • 63.43
  • 58.06
  • 54.15
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001134skeletal muscle tissue
  • UBERON:0034919juvenile stage
8.64e3
  • 8.64e3
63.38
  • 63.38
AEIR
  • AEIR
UBERON:0000989penis
  • UBERON:0034919juvenile stage
8.65e3
  • 8.65e3
63.33
  • 63.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0018241prime adult stage
8.72e3
  • 8.72e3
63.03
  • 63.03
AEIR
  • AEIR
UBERON:0001114right lobe of liver
  • UBERON:0034919juvenile stage
8.73e3
  • 8.73e3
63.00
  • 63.00
AEIR
  • AEIR
UBERON:0003688omentum
  • UBERON:0034919juvenile stage
9.09e3
  • 9.09e3
61.45
  • 61.45
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • UBERON:0034919juvenile stage
9.12e3
  • 9.12e3
61.34
  • 61.34
AEIR
  • AEIR
UBERON:0002116ileum
  • UBERON:0034919juvenile stage
9.20e3
  • 9.20e3
61.02
  • 61.02
AEIR
  • AEIR
UBERON:0010533metanephros cortex
  • UBERON:0034919juvenile stage
9.22e3
  • 9.22e3
60.91
  • 60.91
AEIR
  • AEIR
UBERON:0005417forelimb bud
  • UBERON:0000068embryo stage
9.40e3
  • 9.40e3
60.18
  • 60.18
AEIR
  • AEIR
UBERON:0001876amygdala
  • UBERON:0034919juvenile stage
9.40e3
  • 9.40e3
60.17
  • 60.17
AEIR
  • AEIR
UBERON:0001153caecum
  • UBERON:0034919juvenile stage
9.45e3
  • 9.45e3
59.93
  • 59.93
AEIR
  • AEIR
UBERON:0002084heart left ventricle
  • UBERON:0034919juvenile stage
9.55e3
  • 9.55e3
59.51
  • 59.51
AEIR
  • AEIR
UBERON:0000988pons
  • UBERON:0034919juvenile stage
9.70e3
  • 9.70e3
58.88
  • 58.88
AEIR
  • AEIR
UBERON:0005418hindlimb bud
  • UBERON:0000068embryo stage
9.83e3
  • 9.83e3
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0000112sexually immature stage
  • UBERON:0034919juvenile stage
1.02e4
  • 1.02e4
  • 1.03e4
  • 1.04e4
  • 1.10e4
56.68
  • 56.68
  • 56.20
  • 56.05
  • 53.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
  • UBERON:0034919juvenile stage
1.03e4
  • 1.03e4
  • 1.12e4
  • 1.27e4
56.35
  • 56.35
  • 52.43
  • 46.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
1.06e4
  • 1.06e4
55.14
  • 55.14
AEIR
  • AEIR
UBERON:0000451prefrontal cortex
  • UBERON:0018241prime adult stage
1.09e4
  • 1.09e4
53.59
  • 53.59
AEIR
  • AEIR
UBERON:0001298psoas major muscle
  • UBERON:0018685nursing stage
1.10e4
  • 1.10e4
53.17
  • 53.17
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.12e4
  • 1.12e4
52.33
  • 52.33
AEIR
  • AEIR
UBERON:0002190subcutaneous adipose tissue
  • UBERON:0000104life cycle
  • UBERON:0018685nursing stage
1.18e4
  • 1.18e4
  • 1.19e4
50.09
  • 50.09
  • 49.60
AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • UBERON:0018241prime adult stage
1.30e4
  • 1.30e4
45.06
  • 45.06
AEIR
  • AEIR
UBERON:0005316endocardial endothelium
  • UBERON:0034919juvenile stage
1.31e4
  • 1.31e4
44.38
  • 44.38
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.34e4
  • 1.34e4
43.14
  • 43.14
AEIR
  • AEIR
UBERON:0000178blood
  • UBERON:0018685nursing stage
1.43e4
  • 1.43e4
39.26
  • 39.26
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Cetartiodactyla1 species1 geneCompare expression
Laurasiatheria5 species5 genesCompare expression
Boreoeutheria13 species13 genesCompare expression
Theria14 species14 genesCompare expression
Mammalia15 species15 genesCompare expression
Amniota17 species17 genesCompare expression
Tetrapoda18 species18 genesCompare expression
Euteleostomi19 species19 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSSSCG00000006757.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression

Paralogy information comes from OMA : ENSSSCG00000006757.

Cross-references

EnsemblENSSSCG00000006757
EMBLCU570664
Uniprot/SPTREMBLF1SBR8, F1SBR8_PIG

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