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S. scrofa Gene: - ENSSSCG00000006792 - Sus scrofa (pig)

General information

Ensembl IDENSSSCG00000006792
Name-
Description-
OrganismSus scrofa (pig)
Orthologs(s)10 orthologs
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002114duodenum
  • UBERON:0034919juvenile stage
6.35e3
  • 6.35e3
73.08
  • 73.08
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0018241prime adult stage
1.63e4
  • 1.63e4
31.05
  • 31.05
AEIR
  • AEIR
UBERON:0000029lymph node
  • UBERON:0018241prime adult stage
1.67e4
  • 1.67e4
29.19
  • 29.19
AEIR
  • AEIR
UBERON:0001954Ammon's horn
  • UBERON:0018685nursing stage
1.79e4
  • 1.79e4
24.31
  • 24.31
AEIR
  • AEIR
UBERON:0001870frontal cortex
  • UBERON:0000104life cycle
  • UBERON:0018241prime adult stage
1.83e4
  • 1.83e4
  • 1.85e4
22.38
  • 22.38
  • 21.61
AEIR
  • AEIR
  • AEIR
UBERON:0001401longissimus thoracis muscle
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.85e4
  • 1.85e4
  • 1.96e4
21.74
  • 21.74
  • 17.03
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • UBERON:0018241prime adult stage
1.91e4
  • 1.91e4
18.86
  • 18.86
AEIR
  • AEIR
UBERON:0002048lung
  • UBERON:0018241prime adult stage
  • UBERON:0000104life cycle
1.96e4
  • 1.96e4
  • 2.18e4
16.89
  • 16.89
  • 7.71
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSSSCG00000006792.

Paralogs (same species)

Cross-references

EnsemblENSSSCG00000006792
EMBLFP340442
Uniprot/SPTREMBLF1S636, F1S636_PIG

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